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  Geometry Helps to Compare Persistence Diagrams

Kerber, M., Morozov, D., & Nigmetov, A. (2016). Geometry Helps to Compare Persistence Diagrams. Retrieved from http://arxiv.org/abs/1606.03357.

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arXiv:1606.03357.pdf (Preprint), 2MB
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 Urheber:
Kerber, Michael1, Autor           
Morozov, Dmitriy2, Autor
Nigmetov, Arnur1, Autor
Affiliations:
1Algorithms and Complexity, MPI for Informatics, Max Planck Society, ou_24019              
2External Organizations, ou_persistent22              

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Schlagwörter: Computer Science, Computational Geometry, cs.CG
 Zusammenfassung: Exploiting geometric structure to improve the asymptotic complexity of discrete assignment problems is a well-studied subject. In contrast, the practical advantages of using geometry for such problems have not been explored. We implement geometric variants of the Hopcroft--Karp algorithm for bottleneck matching (based on previous work by Efrat el al.) and of the auction algorithm by Bertsekas for Wasserstein distance computation. Both implementations use k-d trees to replace a linear scan with a geometric proximity query. Our interest in this problem stems from the desire to compute distances between persistence diagrams, a problem that comes up frequently in topological data analysis. We show that our geometric matching algorithms lead to a substantial performance gain, both in running time and in memory consumption, over their purely combinatorial counterparts. Moreover, our implementation significantly outperforms the only other implementation available for comparing persistence diagrams.

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Sprache(n): eng - English
 Datum: 2016-06-102016
 Publikationsstatus: Online veröffentlicht
 Seiten: 20 p.
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 Identifikatoren: arXiv: 1606.03357
URI: http://arxiv.org/abs/1606.03357
BibTex Citekey: KerberarXiv2016
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