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  An epigenetic clock for gestational age at birth based on blood methylation data

Knight, A. K., Craig, J. M., Theda, C., Baekvad-Hansen, M., Bybjerg-Grauholm, J., Hansen, C. S., et al. (2016). An epigenetic clock for gestational age at birth based on blood methylation data. GENOME BIOLOGY, 17: 206. doi:10.1186/s13059-016-1068-z.

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 Urheber:
Knight, Anna K.1, Autor
Craig, Jeffrey M.1, Autor
Theda, Christiane1, Autor
Baekvad-Hansen, Marie1, Autor
Bybjerg-Grauholm, Jonas1, Autor
Hansen, Christine S.1, Autor
Hollegaard, Mads V.1, Autor
Hougaard, David M.1, Autor
Mortensen, Preben B.1, Autor
Weinsheimer, Shantel M.1, Autor
Werge, Thomas M.1, Autor
Brennan, Patricia A.1, Autor
Cubells, Joseph F.1, Autor
Newport, D. Jeffrey1, Autor
Stowe, Zachary N.1, Autor
Cheong, Jeanie L. Y.1, Autor
Dalach, Philippa1, Autor
Doyle, Lex W.1, Autor
Loke, Yuk J.1, Autor
Baccarelli, Andrea A.1, Autor
Just, Allan C.1, AutorWright, Robert O.1, AutorTellez-Rojo, Mara M.1, AutorSvensson, Katherine1, AutorTrevisi, Letizia1, AutorKennedy, Elizabeth M.1, AutorBinder, Elisabeth B.2, Autor           Iurato, Stella2, Autor           Czamara, Darina2, Autor           Raikkonen, Katri1, AutorLahti, Jari M. T.1, AutorPesonen, Anu-Katriina1, AutorKajantie, Eero1, AutorVilla, Pia M.1, AutorLaivuori, Hannele1, AutorHamalainen, Esa1, AutorPark, Hea Jin1, AutorBailey, Lynn B.1, AutorParets, Sasha E.1, AutorKilaru, Varun1, AutorMenon, Ramkumar1, AutorHorvath, Steve1, AutorBush, Nicole R.1, AutorLeWinn, Kaja Z.1, AutorTylavsky, Frances A.1, AutorConneely, Karen N.1, AutorSmith, Alicia K.1, Autor mehr..
Affiliations:
1external, ou_persistent22              
2Dept. Translational Research in Psychiatry, Max Planck Institute of Psychiatry, Max Planck Society, ou_2035295              

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Schlagwörter: Developmental age, Aging, Epigenetic clock, DNA methylation, Preterm birth, Cord blood, Fetus, Blood spot, Biomarker, Medicaid, Socioeconomic status, Birthweight
 Zusammenfassung: Background: Gestational age is often used as a proxy for developmental maturity by clinicians and researchers alike. DNA methylation has previously been shown to be associated with age and has been used to accurately estimate chronological age in children and adults. In the current study, we examine whether DNA methylation in cord blood can be used to estimate gestational age at birth. Results: We find that gestational age can be accurately estimated from DNA methylation of neonatal cord blood and blood spot samples. We calculate a DNA methylation gestational age using 148 CpG sites selected through elastic net regression in six training datasets. We evaluate predictive accuracy in nine testing datasets and find that the accuracy of the DNA methylation gestational age is consistent with that of gestational age estimates based on established methods, such as ultrasound. We also find that an increased DNA methylation gestational age relative to clinical gestational age is associated with birthweight independent of gestational age, sex, and ancestry. Conclusions: DNA methylation can be used to accurately estimate gestational age at or near birth and may provide additional information relevant to developmental stage. Further studies of this predictor are warranted to determine its utility in clinical settings and for research purposes. When clinical estimates are available this measure may increase accuracy in the testing of hypotheses related to developmental age and other early life circumstances.

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Sprache(n): eng - English
 Datum: 2016-10-07
 Publikationsstatus: Online veröffentlicht
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 Identifikatoren: ISI: 000385465700001
DOI: 10.1186/s13059-016-1068-z
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Titel: GENOME BIOLOGY
Genre der Quelle: Zeitschrift
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Seiten: - Band / Heft: 17 Artikelnummer: 206 Start- / Endseite: - Identifikator: ISSN: 1474-760X