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  An epigenetic clock for gestational age at birth based on blood methylation data

Knight, A. K., Craig, J. M., Theda, C., Baekvad-Hansen, M., Bybjerg-Grauholm, J., Hansen, C. S., et al. (2016). An epigenetic clock for gestational age at birth based on blood methylation data. GENOME BIOLOGY, 17: 206. doi:10.1186/s13059-016-1068-z.

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 Creators:
Knight, Anna K.1, Author
Craig, Jeffrey M.1, Author
Theda, Christiane1, Author
Baekvad-Hansen, Marie1, Author
Bybjerg-Grauholm, Jonas1, Author
Hansen, Christine S.1, Author
Hollegaard, Mads V.1, Author
Hougaard, David M.1, Author
Mortensen, Preben B.1, Author
Weinsheimer, Shantel M.1, Author
Werge, Thomas M.1, Author
Brennan, Patricia A.1, Author
Cubells, Joseph F.1, Author
Newport, D. Jeffrey1, Author
Stowe, Zachary N.1, Author
Cheong, Jeanie L. Y.1, Author
Dalach, Philippa1, Author
Doyle, Lex W.1, Author
Loke, Yuk J.1, Author
Baccarelli, Andrea A.1, Author
Just, Allan C.1, AuthorWright, Robert O.1, AuthorTellez-Rojo, Mara M.1, AuthorSvensson, Katherine1, AuthorTrevisi, Letizia1, AuthorKennedy, Elizabeth M.1, AuthorBinder, Elisabeth B.2, Author           Iurato, Stella2, Author           Czamara, Darina2, Author           Raikkonen, Katri1, AuthorLahti, Jari M. T.1, AuthorPesonen, Anu-Katriina1, AuthorKajantie, Eero1, AuthorVilla, Pia M.1, AuthorLaivuori, Hannele1, AuthorHamalainen, Esa1, AuthorPark, Hea Jin1, AuthorBailey, Lynn B.1, AuthorParets, Sasha E.1, AuthorKilaru, Varun1, AuthorMenon, Ramkumar1, AuthorHorvath, Steve1, AuthorBush, Nicole R.1, AuthorLeWinn, Kaja Z.1, AuthorTylavsky, Frances A.1, AuthorConneely, Karen N.1, AuthorSmith, Alicia K.1, Author more..
Affiliations:
1external, ou_persistent22              
2Dept. Translational Research in Psychiatry, Max Planck Institute of Psychiatry, Max Planck Society, ou_2035295              

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Free keywords: Developmental age, Aging, Epigenetic clock, DNA methylation, Preterm birth, Cord blood, Fetus, Blood spot, Biomarker, Medicaid, Socioeconomic status, Birthweight
 Abstract: Background: Gestational age is often used as a proxy for developmental maturity by clinicians and researchers alike. DNA methylation has previously been shown to be associated with age and has been used to accurately estimate chronological age in children and adults. In the current study, we examine whether DNA methylation in cord blood can be used to estimate gestational age at birth. Results: We find that gestational age can be accurately estimated from DNA methylation of neonatal cord blood and blood spot samples. We calculate a DNA methylation gestational age using 148 CpG sites selected through elastic net regression in six training datasets. We evaluate predictive accuracy in nine testing datasets and find that the accuracy of the DNA methylation gestational age is consistent with that of gestational age estimates based on established methods, such as ultrasound. We also find that an increased DNA methylation gestational age relative to clinical gestational age is associated with birthweight independent of gestational age, sex, and ancestry. Conclusions: DNA methylation can be used to accurately estimate gestational age at or near birth and may provide additional information relevant to developmental stage. Further studies of this predictor are warranted to determine its utility in clinical settings and for research purposes. When clinical estimates are available this measure may increase accuracy in the testing of hypotheses related to developmental age and other early life circumstances.

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Language(s): eng - English
 Dates: 2016-10-07
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: ISI: 000385465700001
DOI: 10.1186/s13059-016-1068-z
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Title: GENOME BIOLOGY
Source Genre: Journal
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Pages: - Volume / Issue: 17 Sequence Number: 206 Start / End Page: - Identifier: ISSN: 1474-760X