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  Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

Harr, B., Karakoc, E., Neme, R., Teschke, M., Pfeifle, C., Pezer, Z., et al. (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data, 3: 160075. doi:10.1038/sdata.2016.75.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-002C-3AE2-C Version Permalink: http://hdl.handle.net/11858/00-001M-0000-002D-1F23-B
Genre: Journal Article

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sdata201675 (2).pdf (Publisher version), 3MB
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https://www.nature.com/articles/sdata201675 (Publisher version)
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 Creators:
Harr, Bettina1, Author              
Karakoc, Emre1, Author              
Neme, Rafik1, Author              
Teschke, Meike1, Author              
Pfeifle, Christine1, Author              
Pezer, Zeljka1, Author              
Babiker, Hiba1, Author              
Linnenbrink, Miriam1, Author              
Montero, Inka1, Author              
Scavetta, Rick1, Author              
Abai, M.R., Author
Molins, M.P., Author
Schlegel, M., Author
Ulrich, R.G., Author
Altmüller, J., Author
Franitza, M., Author
Büntge, Anna1, Author              
Künzel, Sven1, Author              
Tautz, Diethard1, Author              
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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 Abstract: Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory. © The Author(s) 2016.

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Language(s): eng - English
 Dates: 2016-02-182016-07-292016-09-132016
 Publication Status: Published in print
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 Rev. Method: -
 Identifiers: DOI: 10.1038/sdata.2016.75
BibTex Citekey: Harr2016
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Title: Scientific Data
  Abbreviation : Sci. Data
Source Genre: Journal
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Publ. Info: London, United Kingdom : Nature Publishing Group
Pages: - Volume / Issue: 3 Sequence Number: 160075 Start / End Page: - Identifier: Other: 2052-4463
CoNE: /journals/resource/2052-4463