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  Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

Harr, B., Karakoc, E., Neme, R., Teschke, M., Pfeifle, C., Pezer, Z., et al. (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data, 3: 160075. doi:10.1038/sdata.2016.75.

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Item Permalink: https://hdl.handle.net/11858/00-001M-0000-002C-3AE2-C Version Permalink: https://hdl.handle.net/21.11116/0000-000F-7EF0-5
Genre: Journal Article

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sdata201675 (2).pdf (Publisher version), 3MB
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2016
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© The Author(s) 2016
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https://www.nature.com/articles/sdata201675 (Publisher version)
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https://www.nature.com/articles/sdata201675#Sec25 (Supplementary material)
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 Creators:
Harr, Bettina1, Author           
Karakoc, Emre1, Author           
Neme, Rafik1, Author           
Teschke, Meike1, Author           
Pfeifle, Christine1, Author           
Pezer, Zeljka1, Author           
Babiker, Hiba1, Author           
Linnenbrink, Miriam1, Author           
Montero, Inka1, Author           
Scavetta, Rick1, Author           
Abai, M.R., Author
Molins, M.P., Author
Schlegel, M., Author
Ulrich, R.G., Author
Altmüller, J., Author
Franitza, M., Author
Büntge, Anna1, Author           
Künzel, Sven1, Author           
Tautz, Diethard1, Author                 
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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 Abstract: Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory. © The Author(s) 2016.

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Language(s): eng - English
 Dates: 2016-02-182016-07-292016-09-132016
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1038/sdata.2016.75
 Degree: -

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Project name : NewGenes
Grant ID : 322564
Funding program : Funding Programme 7 (FP7)
Funding organization : European Commission (EC)
Project name : B.H and M.T.
Grant ID : HA 3139/4-1
Funding program : -
Funding organization : Deutsche Forschungsgemeinschaft (DFG)

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Title: Scientific Data
  Abbreviation : Sci. Data
Source Genre: Journal
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Publ. Info: London, United Kingdom : Nature Publishing Group
Pages: - Volume / Issue: 3 Sequence Number: 160075 Start / End Page: - Identifier: Other: 2052-4463
CoNE: https://pure.mpg.de/cone/journals/resource/2052-4463