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  Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

Harr, B., Karakoc, E., Neme, R., Teschke, M., Pfeifle, C., Pezer, Z., et al. (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data, 3: 160075. doi:10.1038/sdata.2016.75.

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Harr, Bettina1, Autor           
Karakoc, Emre1, Autor           
Neme, Rafik1, Autor           
Teschke, Meike1, Autor           
Pfeifle, Christine1, Autor           
Pezer, Zeljka1, Autor           
Babiker, Hiba1, Autor           
Linnenbrink, Miriam1, Autor           
Montero, Inka1, Autor           
Scavetta, Rick1, Autor           
Abai, M.R., Autor
Molins, M.P., Autor
Schlegel, M., Autor
Ulrich, R.G., Autor
Altmüller, J., Autor
Franitza, M., Autor
Büntge, Anna1, Autor           
Künzel, Sven1, Autor           
Tautz, Diethard1, Autor           
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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 Zusammenfassung: Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory. © The Author(s) 2016.

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Sprache(n): eng - English
 Datum: 2016-02-182016-07-292016-09-132016
 Publikationsstatus: Erschienen
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 Identifikatoren: DOI: 10.1038/sdata.2016.75
BibTex Citekey: Harr2016
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Titel: Scientific Data
  Kurztitel : Sci. Data
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London, United Kingdom : Nature Publishing Group
Seiten: - Band / Heft: 3 Artikelnummer: 160075 Start- / Endseite: - Identifikator: Anderer: 2052-4463
CoNE: https://pure.mpg.de/cone/journals/resource/2052-4463