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  Whole-Genome Sequencing coupled to imputation discovers genetic signals for anthropometric traits

Tachmazidou, I., Süveges, D., Min, J. L., Ritchie, G. R. S., Steinberg, J., Walter, K., et al. (2017). Whole-Genome Sequencing coupled to imputation discovers genetic signals for anthropometric traits. The American Journal of Human Genetics. Advance online publication. doi:10.1016/j.ajhg.2017.04.014.

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 Urheber:
Tachmazidou, Ioanna, Autor
Süveges, Dániel, Autor
Min, Josine L., Autor
Ritchie, Graham R. S., Autor
Steinberg, Julia, Autor
Walter, Klaudia, Autor
Iotchkova, Valentina, Autor
Schwartzentruber, Jeremy, Autor
Huang, Jie, Autor
Memari, Yasin, Autor
McCarthy, Shane, Autor
Crawford, Andrew A., Autor
Bombieri, Cristina, Autor
Cocca, Massimiliano, Autor
Farmaki, Aliki-Eleni, Autor
Gaunt, Tom R., Autor
Jousilahti, Pekka, Autor
Kooijman, Marjolein N., Autor
Lehne, Benjamin, Autor
Malerba, Giovanni, Autor
Männistö, Satu, AutorMatchan, Angela, AutorMedina-Gomez, Carolina, AutorMetrustry, Sarah J., AutorNag, Abhishek, AutorNtalla, Ioanna, AutorPaternoster, Lavinia, AutorRayner, Nigel W., AutorSala, Cinzia, AutorScott, William R., AutorShihab, Hashem A., AutorSoutham, Lorraine, AutorSt Pourcain, Beate1, 2, Autor           Traglia, Michela, AutorTrajanoska, Katerina, AutorZaza, Gialuigi, AutorZhang, Weihua, AutorArtigas, María S., AutorBansal, Narinder, AutorBenn, Marianne, AutorChen, Zhongsheng, AutorDanecek, Petr, AutorLin, Wei-Yu, AutorLocke, Adam, AutorLuan, Jian’an, AutorManning, Alisa K., AutorMulas, Antonella, AutorSidore, Carlo, AutorTybjaerg-Hansen, Anne, AutorVarbo, Anette, AutorZoledziewska, Magdalena, AutorFinan, Chris, AutorHatzikotoulas, Konstantinos, AutorHendricks, Audrey E., AutorKemp, John P., AutorMoayyeri, Alireza, AutorPanoutsopoulou, Kalliope, AutorSzpak, Michal, AutorWilson, Scott G., AutorBoehnke, Michael, AutorCucca, Francesco, AutorDi Angelantonio, Emanuele, AutorLangenberg, Claudia, AutorLindgren, Cecilia, AutorMcCarthy, Mark I., AutorMorris, Andrew P., AutorNordestgaard, Børge G., AutorScott, Robert A., AutorTobin, Martin D., AutorWareham, Nicholas J., AutorBurton, Paul, AutorChambers, John C., AutorSmith, George Davey, AutorDedoussis, George, AutorFelix, Janine F., AutorFranco, Oscar H., AutorGambaro, Giovanni, AutorGasparini, Paolo, AutorHammond, Christopher J., AutorHofman, Albert, AutorJaddoe, Vincent W. V., AutorKleber, Marcus, AutorKooner, Jaspal S., AutorPerola, Markus, AutorRelton, Caroline, AutorRing, Susan M., AutorRivadeneira, Fernando, AutorSalomaa, Veikko, AutorSpector, Timothy D., AutorStegle, Oliver, AutorToniolo, Daniela, AutorUitterlinden, André G., AutorBarroso, Inês, AutorGreenwood, Celia M. T., AutorPerry, John R. B., AutorWalker, Brian R., AutorButterworth, Adam S., AutorXue, Yali, AutorDurbin, Richard, AutorSmall, Kerrin S., AutorSoranzo, Nicole, AutorTimpson, Nicholas J., AutorZeggini, Eleftheria, Autor mehr..
Affiliations:
1Language and Genetics Department, MPI for Psycholinguistics, Max Planck Society, ou_792549              
2Population genetics of human communication, MPI for Psycholinguistics, Max Planck Society, ou_persistent22              

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 Zusammenfassung: Deep sequence-based imputation can enhance the discovery power of genome-wide association studies by assessing previously unexplored variation across the common- and low-frequency spectra. We applied a hybrid whole-genome sequencing (WGS) and deep imputation approach to examine the broader allelic architecture of 12 anthropometric traits associated with height, body mass, and fat distribution in up to 267,616 individuals. We report 106 genome-wide significant signals that have not been previously identified, including 9 low-frequency variants pointing to functional candidates. Of the 106 signals, 6 are in genomic regions that have not been implicated with related traits before, 28 are independent signals at previously reported regions, and 72 represent previously reported signals for a different anthropometric trait. 71% of signals reside within genes and fine mapping resolves 23 signals to one or two likely causal variants. We confirm genetic overlap between human monogenic and polygenic anthropometric traits and find signal enrichment in cis expression QTLs in relevant tissues. Our results highlight the potential of WGS strategies to enhance biologically relevant discoveries across the frequency spectrum.

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Sprache(n): eng - English
 Datum: 2017-04-212017-05-25
 Publikationsstatus: Online veröffentlicht
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1016/j.ajhg.2017.04.014
 Art des Abschluß: -

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Titel: The American Journal of Human Genetics. Advance online publication
  Andere : Am. J. Hum. Genet.
Genre der Quelle: Zeitschrift
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Affiliations:
Ort, Verlag, Ausgabe: American Society of Human Genetics
Seiten: - Band / Heft: - Artikelnummer: - Start- / Endseite: - Identifikator: ISSN: 0002-9297
CoNE: https://pure.mpg.de/cone/journals/resource/954925377893_1