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  The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging

Cajigas, I. J., Tushev, G., Will, T. J., tom Dieck, S., Fürst, N., & Schuman, E. M. (2012). The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron, 74(3), 453-466. doi: 10.1016/j.neuron.2012.02.036.

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Cajigas, I. J.1, Author           
Tushev, G.1, Author           
Will, T. J.1, Author           
tom Dieck, S.1, Author           
Fürst, N.1, Author           
Schuman, E. M.1, Author           
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1Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society, ou_2461710              

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 Abstract: In neurons, dendritic protein synthesis is required for many forms of long-term synaptic plasticity. The population of mRNAs that are localized to dendrites, however, remains sparsely identified. Here, we use deep sequencing to identify the mRNAs resident in the synaptic neuropil in the hippocampus. Analysis of a neuropil data set yielded a list of 8,379 transcripts of which 2,550 are localized in dendrites and/or axons. Using a fluorescent barcode strategy to label individual mRNAs, we show that their relative abundance in the neuropil varies over 3 orders of magnitude. High-resolution in situ hybridization validated the presence of mRNAs in both cultured neurons and hippocampal slices. Among the many mRNAs identified, we observed a large fraction of known synaptic proteins including signaling molecules, scaffolds and receptors. These results reveal a previously unappreciated enormous potential for the local protein synthesis machinery to supply, maintain and modify the dendritic and synaptic proteome.

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Language(s): eng - English
 Dates: 2012-05-10
 Publication Status: Issued
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 Identifiers: eDoc: 641282
ISI: 000303971400006
DOI: 10.1016/j.neuron.2012.02.036
PMID: 22578497
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Title: Neuron
Source Genre: Journal
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Publ. Info: Cambridge, Mass. : Cell Press
Pages: - Volume / Issue: 74 (3) Sequence Number: - Start / End Page: 453 - 466 Identifier: ISSN: 0896-6273
CoNE: https://pure.mpg.de/cone/journals/resource/954925560565