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  WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.

Galiez, C., Siebert, M., Enault, F., Vincent, J., & Söding, J. (2017). WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics, 33(19), 3113-3114. doi:10.1093/bioinformatics/btx383.

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Item Permalink: http://hdl.handle.net/11858/00-001M-0000-002D-FD13-B Version Permalink: http://hdl.handle.net/11858/00-001M-0000-002D-FD17-3
Genre: Journal Article

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 Creators:
Galiez, C.1, Author              
Siebert, M.1, Author              
Enault, F., Author
Vincent, J., Author
Söding, J.1, Author              
Affiliations:
1Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society, ou_1933286              

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 Abstract: WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of times faster, making it suited for metagenomics studies.

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Language(s): eng - English
 Dates: 2017-07-132017-10-01
 Publication Status: Published in print
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 Rev. Method: Peer
 Identifiers: DOI: 10.1093/bioinformatics/btx383
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 33 (19) Sequence Number: - Start / End Page: 3113 - 3114 Identifier: -