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  An Information System for European culture collections: the way forward

Casaregola, S., Vasilenko, A., Romano, P., Robert, V., Ozerskaya, S., Kopf, A., Glockner, F., & Smith, D. (2016). An Information System for European culture collections: the way forward. SpringerPlus, 5:, pp. 1-11.

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アイテムのパーマリンク: https://hdl.handle.net/21.11116/0000-0001-C2C8-2 版のパーマリンク: https://hdl.handle.net/21.11116/0000-0005-5513-6
資料種別: 学術論文

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Kopf_2016.pdf (出版社版), 2MB
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https://hdl.handle.net/21.11116/0000-0005-5514-5
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Kopf_2016.pdf
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 作成者:
Casaregola, S., 著者
Vasilenko, A., 著者
Romano, P., 著者
Robert, V., 著者
Ozerskaya, S., 著者
Kopf, A.1, 著者           
Glockner, F.1, 著者           
Smith, D., 著者
所属:
1Microbial Genomics Group, Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society, ou_2481697              

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 要旨: Culture collections contain indispensable information about the microorganisms preserved in their repositories, such as taxonomical descriptions, origins, physiological and biochemical characteristics, bibliographic references, etc. However, information currently accessible in databases rarely adheres to common standard protocols. The resultant heterogeneity between culture collections, in terms of both content and format, notably hampers microorganism-based research and development (R&D). The optimized exploitation of these resources thus requires standardized, and simplified, access to the associated information. To this end, and in the interest of supporting R&D in the fields of agriculture, health and biotechnology, a pan-European distributed research infrastructure, MIRRI, including over 40 public culture collections and research institutes from 19 European countries, was established. A prime objective of MIRRI is to unite and provide universal access to the fragmented, and untapped, resources, information and expertise available in European public collections of microorganisms; a key component of which is to develop a dynamic Information System. For the first time, both culture collection curators as well as their users have been consulted and their feedback, concerning the needs and requirements for collection databases and data accessibility, utilised. Users primarily noted that databases were not interoperable, thus rendering a global search of multiple databases impossible. Unreliable or out-of-date and, in particular, non-homogenous, taxonomic information was also considered to be a major obstacle to searching microbial data efficiently. Moreover, complex searches are rarely possible in online databases thus limiting the extent of search queries. Curators also consider that overall harmonization-including Standard Operating Procedures, data structure, and software tools-is necessary to facilitate their work and to make high-quality data easily accessible to their users. Clearly, the needs of culture collection curators coincide with those of users on the crucial point of database interoperability. In this regard, and in order to design an appropriate Information System, important aspects on which the culture collection community should focus include: the interoperability of data sets with the ontologies to be used; setting best practice in data management, and the definition of an appropriate data standard.

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言語: eng - English
 日付: 2016-06-17
 出版の状態: 出版
 ページ: 11
 出版情報: -
 目次: -
 査読: 査読あり(内部)
 識別子(DOI, ISBNなど): eDoc: 732736
ISI: 000378473100024
 学位: -

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出版物 1

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出版物名: SpringerPlus
種別: 学術雑誌
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出版社, 出版地: Cham, Switzerland : SpringerOpen
ページ: - 巻号: 5 通巻号: 772 開始・終了ページ: 1 - 11 識別子(ISBN, ISSN, DOIなど): ISSN: 2193-1801
CoNE: https://pure.mpg.de/cone/journals/resource/2193-1801