非表示:
キーワード:
-
要旨:
Up to 50% of carbon remineralization in marine sediments is mediated by the sulfatereducing
bacterial community. Bacteria from the Desulfosarcina-Desulfococcus group that
are related to the DPB1 endosymbiont of Olavius spp. (Sva0081-SRB) occur worldwide at all
depths and account for up to 10% of all cells in sulfidic conditions. However, the physiology
of this ecologically important group remains unknown. The complexity of the microbial
community in sediments challenges traditional isolation and metagenomics. No Sva0081-SRB
bacteria have been cultivated, nor are there available genomes for close relatives, which
makes metagenome assembly more difficult. We present an alternative approach that
combines culture-dependent and independent methods to study Sva0081-SRB. We developed
a low substrate concentration continuous culture that allowed us to maintain the Sva0081-
SRB group for more than 69 days in the laboratory. This culturing method allows
physiological experiments of metabolically active cells at defined conditions in the laboratory.
We specifically sorted cells through fluorescence-activated cell sorting (FACS) of the CARDFISH
hybridized Sva0081-SRB community. Subsequently, whole genome amplification
through multiple displacement amplification (MDA) allowed access to population derived
metagenomic DNA. The PCR based screening for the adenosin-5’-phosphosulfate reductase
subunit A indicated successful amplification of CARD-FISH treated and FACS sorted cells.
Future sequence-based studies can reveal a potential core-genome of the population. We can
directly verify it by testing the hypothesis obtained through sequence analysis with culture
based physiological experiments. This combination of the strong characteristics of both
approaches allows further investigation of the ecological relevance of this highly abundant
group
