English
 
Help Privacy Policy Disclaimer
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT
 
 
DownloadE-Mail
  A standard MIGS/MIMS compliant XML schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML)

Kottmann, R., Gray, T., Murphy, S., Kagan, L., Kravitz, S., Lombardot, T., et al. (2008). A standard MIGS/MIMS compliant XML schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML). OMICS: A Journal of Integrative Biology, 12(2), 115-121.

Item is

Basic

show hide
Genre: Journal Article

Files

show Files
hide Files
:
Kottmann8.pdf (Publisher version), 155KB
Name:
Kottmann8.pdf
Description:
-
Visibility:
Public
MIME-Type / Checksum:
application/pdf / [MD5]
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
License:
-

Locators

show

Creators

show
hide
 Creators:
Kottmann, R.1, Author              
Gray, T., Author
Murphy, S., Author
Kagan, L., Author
Kravitz, S., Author
Lombardot, T.2, Author              
Field, D., Author
Gloeckner, F. O.1, Author              
Affiliations:
1Microbial Genomics Group, Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society, ou_2481697              
2Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society, ou_2481696              

Content

show
hide
Free keywords: -
 Abstract: The Genomic Contextual Data Markup Language (GCDML) is a core project of the Genomic Standards Consortium (GSC) that implements the "Minimum Information about a Genome Sequence" (MIGS) specification and its extension, the "Minimum Information about a Metagenome Sequence" (MIMS). GCDML is an XML Schema for generating MIGS/MIMS compliant reports for data entry, exchange, and storage. When mature, this sample-centric, strongly-typed schema will provide a diverse set of descriptors for describing the exact origin and processing of a biological sample, from sampling to sequencing, and subsequent analysis. Here we describe the need for such a project, outline design principles required to support the project, and make an open call for participation in defining the future content of GCDML. GCDML is freely available, and can be downloaded, along with documentation, from the GSC Web site (http://gensc.org).

Details

show
hide
Language(s): eng - English
 Dates: 2008-06-19
 Publication Status: Published in print
 Pages: 10
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 423452
ISI: 000257319700002
 Degree: -

Event

show

Legal Case

show

Project information

show

Source 1

show
hide
Title: OMICS: A Journal of Integrative Biology
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: Larchmont, NY : Mary Ann Liebert
Pages: - Volume / Issue: 12 (2) Sequence Number: - Start / End Page: 115 - 121 Identifier: ISSN: 1536-2310
CoNE: https://pure.mpg.de/cone/journals/resource/954927732696