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  Comprehensive Metabolomics Studies of Plant Developmental Senescence

Watanabe, M., Tohge, T., Balazadeh, S., Erban, A., Giavalisco, P., Kopka, J., et al. (2018). Comprehensive Metabolomics Studies of Plant Developmental Senescence. In Y. Guo (Ed.), Plant Senescence: Methods and Protocols (pp. 339-358). New York, NY: Springer New York.

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Item Permalink: http://hdl.handle.net/21.11116/0000-0000-63A7-4 Version Permalink: http://hdl.handle.net/21.11116/0000-0000-63A8-3
Genre: Book Chapter

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 Creators:
Watanabe, M.1, Author              
Tohge, T.2, Author              
Balazadeh, S.3, Author              
Erban, A.4, Author              
Giavalisco, P.5, Author              
Kopka, J.4, Author              
Mueller-Roeber, B.6, Author              
Fernie, A. R.2, Author              
Hoefgen, R.1, Author              
Affiliations:
1Amino Acid and Sulfur Metabolism, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753337              
2Central Metabolism, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753339              
3Stress Control Networks, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_2435691              
4Applied Metabolome Analysis, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753338              
5Small Molecules, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753340              
6Transcription Factors and Gene Regulatory Networks, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753316              

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 Abstract: Leaf senescence is an essential developmental process that involves diverse metabolic changes associated with degradation of macromolecules allowing nutrient recycling and remobilization. In contrast to the significant progress in transcriptomic analysis of leaf senescence, metabolomics analyses have been relatively limited. A broad overview of metabolic changes during leaf senescence including the interactions between various metabolic pathways is required to gain a better understanding of the leaf senescence allowing to link transcriptomics with metabolomics and physiology. In this chapter, we describe how to obtain comprehensive metabolite profiles and how to dissect metabolic shifts during leaf senescence in the model plant Arabidopsis thaliana. Unlike nucleic acid analysis for transcriptomics, a comprehensive metabolite profile can only be achieved by combining a suite of analytic tools. Here, information is provided for measurements of the contents of chlorophyll, soluble proteins, and starch by spectrophotometric methods, ions by ion chromatography, thiols and amino acids by HPLC, primary metabolites by GC/TOF-MS, and secondary metabolites and lipophilic metabolites by LC/ESI-MS. These metabolite profiles provide a rich catalogue of metabolic changes during leaf senescence, which is a helpful database and blueprint to be correlated to future studies such as transcriptome and proteome analyses, forward and reverse genetic studies, or stress-induced senescence studies.

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Language(s): eng - English
 Dates: 2018
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1007/978-1-4939-7672-0_28
BibTex Citekey: Watanabe2018
 Degree: -

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Title: Plant Senescence: Methods and Protocols
Source Genre: Book
 Creator(s):
Guo, Yongfeng, Editor
Affiliations:
-
Publ. Info: New York, NY : Springer New York
Pages: - Volume / Issue: - Sequence Number: - Start / End Page: 339 - 358 Identifier: ISBN: 978-1-4939-7672-0