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  Markerless tracking of user-defined anatomical features with deep learning

Mathis, M., Mathis, A., Mamidanna, P., Abe, T., Murty, V., & Bethge, M. (2018). Markerless tracking of user-defined anatomical features with deep learning. Poster presented at 28th Annual Meeting of the Society for the Neural Control of Movement (NCM 2018), Santa Fe, NM, USA.

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Mathis, M, Autor
Mathis, A, Autor
Mamidanna, P, Autor
Abe, T, Autor
Murty, V, Autor
Bethge, M1, 2, Autor           
Affiliations:
1Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497794              
2Research Group Computational Vision and Neuroscience, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497805              

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 Zusammenfassung: Quantifying behavior is crucial for many applications in neuroscience. Videography provides easy methods to observe animals, yet extracting particular aspects of a behavior can be highly time consuming. In motor control studies, humans or other animals are often marked with reflective markers to assist with computer-based tracking, yet markers are intrusive, especially for smaller animals, and the number and location of the markers must be determined a priori. Here we provide a highly efficient method of markerless tracking in mice based on transfer learning with very few training samples (~ 200 frames). We demonstrate the versatility of this framework by tracking various body parts of mice in different tasks: odor trail-tracking (by one or multiple mice simultaneously), and a skilled forelimb reach and pull task. For example, during the skilled reaching behavior, individual digit joints can be automatically tracked from the hand. Remarkably, even when a small number of frames are labeled, the algorithm achieves excellent tracking performance on test frames that is comparable to human accuracy.

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 Datum: 2018-05
 Publikationsstatus: Erschienen
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 Identifikatoren: BibTex Citekey: MathisMMAMB2018
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Titel: 28th Annual Meeting of the Society for the Neural Control of Movement (NCM 2018)
Veranstaltungsort: Santa Fe, NM, USA
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Titel: 28th Annual Meeting of the Society for the Neural Control of Movement (NCM 2018)
Genre der Quelle: Konferenzband
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: - Artikelnummer: 2-G-81 Start- / Endseite: 119 Identifikator: -