English
 
User Manual Privacy Policy Disclaimer Contact us
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT
  MMseqs2 desktop and local web server app for fast, interactive sequence searches.

Mirdita, M., Steinegger, M., & Söding, J. (2019). MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, 35(16), 2856-2858. doi:10.1093/bioinformatics/bty1057.

Item is

Basic

show hide
Item Permalink: http://hdl.handle.net/21.11116/0000-0002-BDBA-8 Version Permalink: http://hdl.handle.net/21.11116/0000-0004-9A01-D
Genre: Journal Article

Files

show Files
hide Files
:
3017752.pdf (Publisher version), 199KB
Name:
3017752.pdf
Description:
-
Visibility:
Public
MIME-Type / Checksum:
application/pdf / [MD5]
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
:
3017752_Suppl.pdf (Supplementary material), 137KB
Name:
3017752_Suppl.pdf
Description:
-
Visibility:
Public
MIME-Type / Checksum:
application/pdf / [MD5]
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
License:
-

Locators

show

Creators

show
hide
 Creators:
Mirdita, M.1, Author              
Steinegger, M.1, Author              
Söding, J.1, Author              
Affiliations:
1Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society, ou_1933286              

Content

show
hide
Free keywords: -
 Abstract: Summary: The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2's runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST. Availability and implementation: The app is easy to install for non-experts. GPLv3-licensed code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.

Details

show
hide
Language(s): eng - English
 Dates: 2019-01-072019-08-15
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Method: Peer
 Identifiers: DOI: 10.1093/bioinformatics/bty1057
 Degree: -

Event

show

Legal Case

show

Project information

show

Source 1

show
hide
Title: Bioinformatics
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: -
Pages: - Volume / Issue: 35 (16) Sequence Number: - Start / End Page: 2856 - 2858 Identifier: -