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  DeepCEST: 9.4 T Chemical exchange saturation transfer MRI contrast predicted from 3 T data – a proof of concept study

Zaiss, M., Deshmane, A., Schuppert, M., Herz, K., Glang, F., Ehses, P., et al. (2019). DeepCEST: 9.4 T Chemical exchange saturation transfer MRI contrast predicted from 3 T data – a proof of concept study. Magnetic Resonance in Medicine, 81(6), 3901-3914. doi:10.1002/mrm.27690.

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 Creators:
Zaiss, M1, Author           
Deshmane, A1, Author           
Schuppert, M1, Author           
Herz, K1, Author           
Glang, F1, Author           
Ehses, P, Author           
Lindig, T2, Author           
Bender, B, Author           
Ernemann, U, Author
Scheffler, K1, Author           
Affiliations:
1Department High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497796              
2Institutional Guests, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_3505519              

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 Abstract: Purpose
To determine the feasibility of employing the prior knowledge of well‐separated chemical exchange saturation transfer (CEST) signals in the 9.4 T Z‐spectrum to separate overlapping CEST signals acquired at 3 T, using a deep learning approach trained with 3 T and 9.4 T CEST spectral data from brains of the same subjects.
Methods

Highly spectrally resolved Z‐spectra from the same volunteer were acquired by 3D‐snapshot CEST MRI at 3 T and 9.4 T at low saturation power of B1 = 0.6 µT. The volume‐registered 3 T Z‐spectra‐stack was then used as input data for a three layer deep neural network with the volume‐registered 9.4 T fitted parameter stack as target data.
Results

An optimized neural net architecture could be found and verified in healthy volunteers. The gray‐/white‐matter contrast of the different CEST effects was predicted with only small deviations (Pearson R = 0.89). The 9.4 T prediction was less noisy compared to the directly measured CEST maps, although at the cost of slightly lower tissue contrast. Application to an unseen tumor patient measured at 3 T and 9.4 T revealed that tumorous tissue Z‐spectra and corresponding hyper‐/hypointensities of different CEST effects can also be predicted (Pearson R = 0.84).
Conclusion

The 9.4 T CEST signals acquired at low saturation power can be accurately estimated from CEST imaging at 3 T using a neural network trained with coregistered 3 T and 9.4 T data of healthy subjects. The deepCEST approach generalizes to Z‐spectra of tumor areas and might indicate whether additional ultrahigh‐field (UHF) scans will be beneficial.

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 Dates: 2019-022019-06
 Publication Status: Issued
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 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1002/mrm.27690
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Title: Magnetic Resonance in Medicine
Source Genre: Journal
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Publ. Info: New York : Wiley-Liss
Pages: - Volume / Issue: 81 (6) Sequence Number: - Start / End Page: 3901 - 3914 Identifier: ISSN: 0740-3194
CoNE: https://pure.mpg.de/cone/journals/resource/954925538149