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  A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data.

Simion, P., Belkhir, K., François, C., Veyssier, J., Rink, J., Manuel, M., et al. (2018). A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data. BMC biology, 16(1): 28. doi:10.1186/s12915-018-0486-7.

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 Creators:
Simion, Paul, Author
Belkhir, Khalid, Author
François, Clémentine, Author
Veyssier, Julien, Author
Rink, Jochen1, Author           
Manuel, Michaël, Author
Philippe, Hervé, Author
Telford, Maximilian J, Author
Affiliations:
1Max Planck Institute for Molecular Cell Biology and Genetics, Max Planck Society, ou_2340692              

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 Abstract: Multiple RNA samples are frequently processed together and often mixed before multiplex sequencing in the same sequencing run. While different samples can be separated post sequencing using sample barcodes, the possibility of cross contamination between biological samples from different species that have been processed or sequenced in parallel has the potential to be extremely deleterious for downstream analyses.

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 Dates: 2018-03-05
 Publication Status: Issued
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 Rev. Type: -
 Identifiers: DOI: 10.1186/s12915-018-0486-7
Other: cbg-7088
PMID: 29506533
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Title: BMC biology
  Other : BMC Biol
Source Genre: Journal
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Pages: - Volume / Issue: 16 (1) Sequence Number: 28 Start / End Page: - Identifier: -