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  First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Iacobucci, C., Piotrowski, C., Aebersold, R., Amaral, B. C., Andrews, P., Bernfur, K., et al. (2019). First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. Analytical Chemistry, 91(11), 6953-6961. doi:10.1021/acs.analchem.9b00658.

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Item Permalink: http://hdl.handle.net/21.11116/0000-0003-E9A2-F Version Permalink: http://hdl.handle.net/21.11116/0000-0003-E9B4-B
Genre: Journal Article

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 Creators:
Iacobucci, Claudio1, Author
Piotrowski, Christine1, Author
Aebersold, Ruedi1, Author
Amaral, Bruno C.1, Author
Andrews, Philip1, Author
Bernfur, Katja1, Author
Borchers, Christoph1, Author
Brodie, Nicolas I.1, Author
Bruce, James E.1, Author
Cao, Yong1, Author
Chaignepain, Stephane1, Author
Chavez, Juan D.1, Author
Claverol, Stephane1, Author
Cox, Jürgen2, Author              
Davis, Trisha1, Author
Degliesposti, Gianluca1, Author
Dong, Meng-Qiu1, Author
Edinger, Nufar1, Author
Emanuelsson, Cecilia1, Author
Gay, Marina1, Author
Goetze, Michael1, AuthorGomes-Neto, Francisco1, AuthorGozzo, Fabio C.1, AuthorGutierrez, Craig1, AuthorHaupt, Caroline1, AuthorHeck, Albert J. R.1, AuthorHerzog, Franz1, AuthorHuang, Lan1, AuthorHoopmann, Michael R.1, AuthorKalisman, Nir1, AuthorKlykov, Oleg1, AuthorKukacka, Zdenek1, AuthorLiu, Fan1, AuthorMacCoss, Michael J.1, AuthorMechtler, Karl1, AuthorMesika, Ravit1, AuthorMoritz, Robert L.1, AuthorNagaraj, Nagarjuna3, Author              Nesati, Victor1, AuthorNeves-Ferreira, Ana G. C.1, AuthorNinnis, Robert1, AuthorNovak, Petr1, AuthorO'Reilly, Francis J.1, AuthorPelzing, Matthias1, AuthorPetrotchenko, Evgeniy1, AuthorPiersimoni, Lolita1, AuthorPlasencia, Manolo1, AuthorPukala, Tara1, AuthorRand, Kasper D.1, AuthorRappsilber, Juri1, AuthorReichmann, Dana1, AuthorSailer, Carolin1, AuthorSarnowski, Chris P.1, AuthorScheltema, Richard A.1, AuthorSchmidt, Carla1, AuthorSchriemer, David C.1, AuthorShi, Yi1, AuthorSkehel, J. Mark1, AuthorSlavin, Moriya1, AuthorSobott, Frank1, AuthorSolis-Mezarino, Victor1, AuthorStephanowitz, Heike1, AuthorStengel, Florian1, AuthorStieger, Christian E.1, AuthorTrabjerg, Esben1, AuthorTrnka, Michael1, AuthorVilaseca, Marta1, AuthorViner, Rosa1, AuthorXiang, Yufei1, AuthorYilmaz, Sule2, Author              Zelter, Alex1, AuthorZiemianowicz, Daniel1, AuthorLeitner, Alexander1, AuthorSinz, Andrea1, Author more..
Affiliations:
1external, ou_persistent22              
2Cox, Jürgen / Computational Systems Biochemistry, Max Planck Institute of Biochemistry, Max Planck Society, ou_2063284              
3Scientific Service Groups, Max Planck Institute of Biochemistry, Max Planck Society, ou_1565170              

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Free keywords: DISTANCE RESTRAINTS; STRATEGY; INTERFACES; PROTEINS; EVALUATE; DATABASEChemistry;
 Abstract: The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein protein interactions has increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats. Such consensus formats should become accepted in the field and be shown to lead to reproducible results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. Our study therefore builds the framework for establishing best practice guidelines to conduct cross-linking experiments, perform data analysis, and define reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.

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Language(s): eng - English
 Dates: 2019
 Publication Status: Published in print
 Pages: 9
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Degree: -

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Title: Analytical Chemistry
  Abbreviation : Anal. Chem.
Source Genre: Journal
 Creator(s):
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Publ. Info: Washington, D.C. : American Chemical Society
Pages: - Volume / Issue: 91 (11) Sequence Number: - Start / End Page: 6953 - 6961 Identifier: ISSN: 0003-2700
CoNE: https://pure.mpg.de/cone/journals/resource/111032812862552