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  OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

Greiner, S., Lehwark, P., & Bock, R. (2019). OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research, 47(W1), W59-W64. doi:10.1093/nar/gkz238.

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Item Permalink: http://hdl.handle.net/21.11116/0000-0004-5030-B Version Permalink: http://hdl.handle.net/21.11116/0000-0004-5031-A
Genre: Journal Article
Alternative Title : Nucleic Acids Research

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 Creators:
Greiner, S.1, Author              
Lehwark, Pascal2, Author
Bock, R.3, Author              
Affiliations:
1Cytoplasmic and Evolutionary Genetics, Department Bock, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753324              
2external, ou_persistent22              
3Organelle Biology and Biotechnology, Department Bock, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_1753326              

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 Abstract: Organellar (plastid and mitochondrial) genomes play an important role in resolving phylogenetic relationships, and next-generation sequencing technologies have led to a burst in their availability. The ongoing massive sequencing efforts require software tools for routine assembly and annotation of organellar genomes as well as their display as physical maps. OrganellarGenomeDRAW (OGDRAW) has become the standard tool to draw graphical maps of plastid and mitochondrial genomes. Here, we present a new version of OGDRAW equipped with a new front end. Besides several new features, OGDRAW now has access to a local copy of the organelle genome database of the NCBI RefSeq project. Together with batch processing of (multi-)GenBank files, this enables the user to easily visualize large sets of organellar genomes spanning entire taxonomic clades. The new OGDRAW server can be accessed at https://chlorobox.mpimp-golm.mpg.de/OGDraw.html.

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 Dates: 2019-04-05
 Publication Status: Published in print
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 Identifiers: DOI: 10.1093/nar/gkz238
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Title: Nucleic Acids Research
  Alternative Title : nar
Source Genre: Journal
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Pages: - Volume / Issue: 47 (W1) Sequence Number: - Start / End Page: W59 - W64 Identifier: ISBN: 0305-1048