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  Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear

Gretzinger, J., Molak, M., Reiter, E., Pfrengle, S., Urban, C., Neukamm, J., et al. (2019). Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear. Scientific Reports, 9(1): 10700. doi:10.1038/s41598-019-47073-z.

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 Urheber:
Gretzinger, Joscha1, Autor           
Molak, Martyna, Autor
Reiter, Ella, Autor
Pfrengle, Saskia, Autor
Urban, Christian, Autor
Neukamm, Judith, Autor
Blant, Michel, Autor
Conard, Nicholas J., Autor
Cupillard, Christophe, Autor
Dimitrijević, Vesna, Autor
Drucker, Dorothée G., Autor
Hofman-Kamińska, Emilia, Autor
Kowalczyk, Rafat, Autor
Krajcarz, Maciej T., Autor
Krajcarz, Magdalena, Autor
Münzel, Susanne C., Autor
Peresani, Marco, Autor
Romandini, Matteo, Autor
Rufí, Isaac, Autor
Soler, Joaquim, Autor
Terlato, Gabriele, AutorKrause, Johannes1, 2, Autor           Bocherens, Hervé, AutorSchuenemann, Verena J., Autor mehr..
Affiliations:
1Archaeogenetics, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2074310              
2MHAAM, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2541699              

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Schlagwörter: Evolutionary biology, Evolutionary genetics
 Zusammenfassung: The cave bear (Ursus spelaeus) is one of the Late Pleistocene megafauna species that faced extinction at the end of the last ice age. Although it is represented by one of the largest fossil records in Europe and has been subject to several interdisciplinary studies including palaeogenetic research, its fate remains highly controversial. Here, we used a combination of hybridisation capture and next generation sequencing to reconstruct 59 new complete cave bear mitochondrial genomes (mtDNA) from 14 sites in Western, Central and Eastern Europe. In a Bayesian phylogenetic analysis, we compared them to 64 published cave bear mtDNA sequences to reconstruct the population dynamics and phylogeography during the Late Pleistocene. We found five major mitochondrial DNA lineages resulting in a noticeably more complex biogeography of the European lineages during the last 50,000 years than previously assumed. Furthermore, our calculated effective female population sizes suggest a drastic cave bear population decline starting around 40,000 years ago at the onset of the Aurignacian, coinciding with the spread of anatomically modern humans in Europe. Thus, our study supports a potential significant human role in the general extinction and local extirpation of the European cave bear and illuminates the fate of this megafauna species. © 2019, The Author(s).

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Sprache(n): eng - English
 Datum: 2019-08-15
 Publikationsstatus: Online veröffentlicht
 Seiten: 11
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: Introduction
Results
- Sample collection and processing
- Phylogenetic analysis
- Population size analysis
Discussion
- Phylogeography and population dynamics
- Extinction
Material and Methods
- Sample collection
- DNA extraction
- Sequence processing
- Data from other studies
- Alignment and model selection
- Inferring phylogenetic relationships
- Comparison of D-Loop and Mitogenome Tree Topology Differences
- Bayesian phylogenetic inference and demographic reconstruction
- Accession numbers
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 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41598-019-47073-z
Anderer: shh2378
 Art des Abschluß: -

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Titel: Scientific Reports
  Kurztitel : Sci. Rep.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London, UK : Nature Publishing Group
Seiten: - Band / Heft: 9 (1) Artikelnummer: 10700 Start- / Endseite: - Identifikator: ISSN: 2045-2322
CoNE: https://pure.mpg.de/cone/journals/resource/2045-2322