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  Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

Carpenter, E. J., Matasci, N., Ayyampalayam, S., Wu, S., Sun, J., Yu, J., et al. (2019). Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). GigaScience, 8(10): giz126. doi:10.1093/gigascience/giz126.

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Carpenter, Eric J, Author
Matasci, Naim, Author
Ayyampalayam, Saravanaraj, Author
Wu, Shuangxiu, Author
Sun, Jing, Author
Yu, Jun, Author
Jimenez Vieira, Fabio Rocha, Author
Bowler, Chris, Author
Dorrell, Richard G, Author
Gitzendanner, Matthew A, Author
Li, Ling, Author
Du, Wensi, Author
Ullrich, Kristian K.1, Author              
Wickett, Norman J, Author
Barkmann, Todd J, Author
Barker, Michael S, Author
Leebens-Mack, James H, Author
Wong, Gane Ka-Shu, Author
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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 Abstract: The 1000 Plant transcriptomes initiative (1KP) explored genetic diversity by sequencing RNA from 1,342 samples representing 1,173 species of green plants (Viridiplantae).This data release accompanies the initiative's final/capstone publication on a set of 3 analyses inferring species trees, whole genome duplications, and gene family expansions. These and previous analyses are based on de novo transcriptome assemblies and related gene predictions. Here, we assess their data and assembly qualities and explain how we detected potential contaminations.These data will be useful to plant and/or evolutionary scientists with interests in particular gene families, either across the green plant tree of life or in more focused lineages.

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Language(s): eng - English
 Dates: 2019-08-082019-06-272019-09-282019-10-232019-10
 Publication Status: Published in print
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 Identifiers: DOI: 10.1093/gigascience/giz126
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Title: GigaScience
Source Genre: Journal
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Publ. Info: London : BioMed Central
Pages: - Volume / Issue: 8 (10) Sequence Number: giz126 Start / End Page: - Identifier: ISSN: 2047-217X
CoNE: https://pure.mpg.de/cone/journals/resource/2047-217X