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  Benchmarking tomographic acquisition schemes for high-resolution structural biology

Turoňová, B., Hagen, W. J. H., Obr, M., Mosalaganti, S., Beugelink, J. W., Zimmerli, C. E., et al. (2020). Benchmarking tomographic acquisition schemes for high-resolution structural biology. Nature Communications, 11: 876. doi:10.1038/s41467-020-14535-2.

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Turoňová, Beata1, Autor
Hagen, Wim J. H.1, Autor
Obr, Martin2, Autor
Mosalaganti, Shyamal1, Autor
Beugelink, J. Wouter1, 3, Autor
Zimmerli, Christian E.1, 4, Autor
Kräusslich, Hans-Georg2, Autor
Beck, Martin1, 5, Autor                 
Affiliations:
1European Molecular Biology Laboratory, Structure and Computational Biology Unit, Heidelberg, Germany, ou_persistent22              
2Department of Infectious Diseases, Virology, Universitätsklinikum Heidelberg, Heidelberg, Germany, ou_persistent22              
3Cryo-Electron Microscopy, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands, ou_persistent22              
4Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences, Heidelberg, Germany, ou_persistent22              
5Department of Molecular Sociology, Max Planck Institute of Biophysics, Max Planck Society, ou_3040395              

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 Zusammenfassung: Cryo electron tomography with subsequent subtomogram averaging is a powerful technique to structurally analyze macromolecular complexes in their native context. Although close to atomic resolution in principle can be obtained, it is not clear how individual experimental parameters contribute to the attainable resolution. Here, we have used immature HIV-1 lattice as a benchmarking sample to optimize the attainable resolution for subtomogram averaging. We systematically tested various experimental parameters such as the order of projections, different angular increments and the use of the Volta phase plate. We find that although any of the prominently used acquisition schemes is sufficient to obtain subnanometer resolution, dose-symmetric acquisition provides considerably better outcome. We discuss our findings in order to provide guidance for data acquisition. Our data is publicly available and might be used to further develop processing routines.

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Sprache(n): eng - English
 Datum: 2019-08-102020-01-162020-02-13
 Publikationsstatus: Online veröffentlicht
 Seiten: 9
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41467-020-14535-2
BibTex Citekey: turonova_benchmarking_2020
 Art des Abschluß: -

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Titel: Nature Communications
  Kurztitel : Nat. Commun.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London : Nature Publishing Group
Seiten: - Band / Heft: 11 Artikelnummer: 876 Start- / Endseite: - Identifikator: ISSN: 2041-1723
CoNE: https://pure.mpg.de/cone/journals/resource/2041-1723