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  Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., et al. (2021). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31. doi:10.1038/s41597-021-00816-y.

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Yates_Community_curated_ScieData_2021.pdf (Publisher version), 8MB
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Yates_Community_curated_ScieData_2021.pdf
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2021
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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Cre-ative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not per-mitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0

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Fellows Yates, James A.1, Author                 
Andrades Valtueña, Aida1, Author                 
Vågene, Ashild J., Author
Cribdon, Becky, Author
Velsko, Irina Marie1, Author                 
Borry, Maxime1, Author                 
Bravo-López, Miriam J., Author
Fernandez-Guerra, Antonio, Author
Green, Eleanor J., Author
Ramachandran, Shreya L., Author
Heintzman, Peter D., Author
Spyrou, Maria A.1, Author                 
Hübner, Alexander2, Author                 
Gancz, Abigail S., Author
Hider, Jessica, Author
Allshouse, Aurora F., Author
Warinner, Christina G.1, Author                 
Affiliations:
1Archaeogenetics, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2074310              
2Human Population History, Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society, ou_2074313              

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 Abstract: Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen dramatically in recent years, and tracking this data for reuse is particularly important for large-scale ecological and evolutionary studies of individual microbial taxa, microbial communities, and metagenomic assemblages. AncientMetagenomeDir (archived at https://doi.org/10.5281/zenodo.3980833) is a collection of indices of published genetic data deriving from ancient microbial samples that provides basic, standardised metadata and accession numbers to allow rapid data retrieval from online repositories. These collections are community-curated and span multiple sub-disciplines in order to ensure adequate breadth and consensus in metadata definitions, as well as longevity of the database. Internal guidelines and automated checks to facilitate compatibility with established sequence-read archives and term-ontologies ensure consistency and interoperability for future meta-analyses. This collection will also assist in standardising metadata reporting for future ancient metagenomic studies.

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Language(s): eng - English
 Dates: 2021
 Publication Status: Published online
 Pages: -
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 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1038/s41597-021-00816-y
 Degree: -

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Title: Scientific Data
Source Genre: Journal
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Publ. Info: London, United Kingdom : Nature Publishing Group
Pages: - Volume / Issue: 8 Sequence Number: 31 Start / End Page: - Identifier: ISSN: 2052-4463