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  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Nelson, G., Boehm, U., Bagley, S., Bajcsy, P., Bischof, J., Brown, C. M., et al.(2021). QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.

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Nelson et al..pdf (Preprint), 958KB
 
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https://arxiv.org/abs/2101.09153 (Preprint)
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 Urheber:
Nelson, Glyn1, Autor
Boehm, Ulrike1, Autor
Bagley, Steve1, Autor
Bajcsy, Peter1, Autor
Bischof, Johanna1, Autor
Brown, Claire M1, Autor
Dauphin, Aurelien1, Autor
Dobbie, Ian M1, Autor
Eriksson, John E1, Autor
Faklaris, Orestis1, Autor
Fernandez-Rodriguez, Julia1, Autor
Ferrand, Alexia1, Autor
Gelman, Laurent1, Autor
Gheisari, Ali1, Autor
Hartmann, Hella1, Autor
Kukat, Christian1, Autor
Laude, Alex1, Autor
Mitkovski, Miso1, Autor
Munck, Sebastian1, Autor
North, Alison J1, Autor
Rasse, Tobias M1, AutorResch-Genger, Ute1, AutorSchuetz, Lucas C1, AutorSeitz, Arne1, AutorStrambio-De-Castillia, Caterina1, AutorSwedlow, Jason R1, AutorAlexopoulos, Ioannis1, AutorAumayr, Karin1, AutorAvilov, Sergiy2, Autor           Bakker, Gert-Jan1, AutorBammann, Rodrigo R1, AutorBassi, Andrea1, AutorBeckert, Hannes1, AutorBeer, Sebastian1, AutorBelyaev, Yury1, AutorBierwagen, Jakob1, AutorBirngruber, Konstantin A1, AutorBosch, Manel1, AutorBreitlow, Juergen1, AutorCameron, Lisa A1, AutorChalfoun, Joe1, AutorChambers, James J1, AutorChen, Chieh-Li1, AutorConde-Sousa, Eduardo1, AutorCorbett, Alexander D1, AutorCordelieres, Fabrice P1, AutorNery, Elaine Del1, AutorDietzel, Ralf1, AutorEismann, Frank1, AutorFazeli, Elnaz1, AutorFelscher, Andreas1, AutorFried, Hans1, AutorGaudreault, Nathalie1, AutorGoh, Wah Ing1, AutorGuilbert, Thomas1, AutorHadleigh, Roland1, AutorHemmerich, Peter1, AutorHolst, Gerhard A1, AutorItano, Michelle S1, AutorJaffe, Claudia B1, AutorJambor, Helena K1, AutorJarvis, Stuart C1, AutorKeppler, Antje1, AutorKirchenbuechler, David1, AutorKirchner, Marcel1, AutorKobayashi, Norio1, AutorKrens, Gabriel1, AutorKunis, Susanne1, AutorLacoste, Judith1, AutorMarcello, Marco1, AutorMartins, Gabriel G1, AutorMetcalf, Daniel J1, AutorMitchell, Claire A1, AutorMoore, Joshua1, AutorMueller, Tobias1, AutorNelson, Michael S1, AutorOgg, Stephen1, AutorOnami, Shuichi1, AutorPalmer, Alexandra L1, AutorPaul-Gilloteaux, Perrine1, AutorPimentel, Jaime A1, AutorPlantard, Laure1, AutorPodder, Santosh1, AutorRexhepaj, Elton1, AutorRoyon, Arnaud1, AutorSaari, Markku A1, AutorSchapman, Damien1, AutorSchoonderwoert, Vincent1, AutorSchroth-Diez, Britta1, AutorSchwartz, Stanley1, AutorShaw, Michael1, AutorSpitaler, Martin1, AutorStoeckl, Martin T1, AutorSudar, Damir1, AutorTeillon, Jeremie1, AutorTerjung, Stefan1, AutorThuenauer, Roland1, AutorWilms, Christian D1, AutorWright, Graham D1, AutorNitschke, Roland1, Autor mehr..
Affiliations:
1External Organizations, ou_persistent22              
2Max Planck Institute of Immunobiology and Epigenetics, Max Planck Society, ou_2243641              

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 Zusammenfassung: In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achieving a better understanding of the performance and limitations of microscopes and improved quality control (QC) in light microscopy. The ultimate goal of the QUAREP-LiMi initiative is to establish a set of common QC standards, guidelines, metadata models, and tools, including detailed protocols, with the ultimate aim of improving reproducible advances in scientific research. This White Paper 1) summarizes the major obstacles identified in the field that motivated the launch of the QUAREP-LiMi initiative; 2) identifies the urgent need to address these obstacles in a grassroots manner, through a community of stakeholders including, researchers, imaging scientists, bioimage analysts, bioimage informatics developers, corporate partners, funding agencies, standards organizations, scientific publishers, and observers of such; 3) outlines the current actions of the QUAREP-LiMi initiative, and 4) proposes future steps that can be taken to improve the dissemination and acceptance of the proposed guidelines to manage QC. To summarize, the principal goal of the QUAREP-LiMi initiative is to improve the overall quality and reproducibility of light microscope image data by introducing broadly accepted standard practices and accurately captured image data metrics.

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Sprache(n): eng - English
 Datum: 2021-01-27
 Publikationsstatus: Online veröffentlicht
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 Identifikatoren: arXiv: arXiv:2101.09153
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