English
 
Help Privacy Policy Disclaimer
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT
  On the standardization of ZooMS nomenclature

Brown, S., Douka, K., Collins, M. J., & Richter, K. K. (2021). On the standardization of ZooMS nomenclature. Journal of Proteomics, 235: 104041. doi:10.1016/j.jprot.2020.104041.

Item is

Basic

show hide
Genre: Journal Article

Files

show Files
hide Files
:
shh2889.pdf (Publisher version), 4MB
 
File Permalink:
-
Name:
shh2889.pdf
Description:
-
Visibility:
Private
MIME-Type / Checksum:
application/pdf
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
License:
-
:
shh2889pre.pdf (Preprint), 510KB
 
File Permalink:
-
Name:
shh2889pre.pdf
Description:
-
Visibility:
Private
MIME-Type / Checksum:
application/pdf
Technical Metadata:
Copyright Date:
-
Copyright Info:
-
License:
-

Locators

show

Creators

show
hide
 Creators:
Brown, Samantha1, Author              
Douka, Katerina1, 2, Author              
Collins, Matthew J, Author
Richter, Kristine Korzow2, Author              
Affiliations:
1FINDER, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2541700              
2Archaeology, Max Planck Institute for the Science of Human History, Max Planck Society, ou_2074312              

Content

show
hide
Free keywords: Collagen, Zooarcheology, Peptide mass fingerprinting, MALDI-TOF-MS, ZooMS
 Abstract: Zooarchaeology by Mass Spectrometry (ZooMS) is rapidly becoming a staple in archaeological and cultural heritage science. Developed a decade ago, this peptide mass fingerprinting technique is expanding from a small group of researchers mainly involved in method development to a broader group of scientists using it as another tool in their toolboxes. With new researchers beginning to use the method, it is imperative that a user-friendly, standardized approach be established. A major barrier has been the often haphazard and changing nomenclature used to label peptide markers necessary for taxonomic identification. Consistent, reliable, and easy-to-understand nomenclature is key to the growth of ZooMS, particularly as the reference library continues to expand. We propose a new set of standardized guidelines for peptide markers based on their position in the type I collagen sequence from the beginning of the highly conserved, helical region. Since this region has no insertions or deletions over a wide range of taxonomic groups, the proposed nomenclature system can be used reliably and consistently across all vertebrate taxa. We propose to label ZooMS peptide markers with the gene, followed by the position of the first and last amino acid of the marker from the start of the helical region. Significance statement We propose a standardized nomenclature system for ZooMS peptide markers that provides consistent labels across multiple, broad taxonomic groups. This system unambiguously locates the marker peptides in the type I collagen sequence, avoids duplication of marker names, and facilitates the creation of large ZooMS databases which can include all vertebrates.

Details

show
hide
Language(s): eng - English
 Dates: 2020-11-052021-03-20
 Publication Status: Published in print
 Pages: 6
 Publishing info: -
 Table of Contents: 1. Introduction
2. Type I collagen
3. ZooMS nomenclature
4. Conclusion
CRediT authorship contribution statement
 Rev. Type: No review
 Identifiers: DOI: 10.1016/j.jprot.2020.104041
Other: shh2889
 Degree: -

Event

show

Legal Case

show

Project information

show hide
Project name : Finder
Grant ID : 715069
Funding program : Horizon 2020 (H2020)
Funding organization : European Commission (EC)

Source 1

show
hide
Title: Journal of Proteomics
  Abbreviation : J. Proteome
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: Amsterdam, The Netherlands : European Proteomics Association & Elsevier
Pages: - Volume / Issue: 235 Sequence Number: 104041 Start / End Page: - Identifier: ISSN: 1874-3919
CoNE: https://pure.mpg.de/cone/journals/resource/1874-3919