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  Serial Electron Diffraction Data Processing With diffractem and CrystFEL

Bücker, R., Hogan-Lamarre, P., & Miller, R. J. D. (2021). Serial Electron Diffraction Data Processing With diffractem and CrystFEL. Frontiers in Molecular Biosciences, 8: 624264. doi:10.3389/fmolb.2021.624264.

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Item Permalink: https://hdl.handle.net/21.11116/0000-0008-935C-B Version Permalink: https://hdl.handle.net/21.11116/0000-000B-CA6B-A
Genre: Journal Article

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This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
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https://dx.doi.org/10.3389/fmolb.2021.624264 (Publisher version)
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https://arxiv.org/abs/2011.02977 (Preprint)
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 Creators:
Bücker, R.1, 2, 3, Author           
Hogan-Lamarre, P.1, 4, 5, Author           
Miller, R. J. D.4, 5, Author
Affiliations:
1Miller Group, Atomically Resolved Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_1938288              
2Center for Free-Electron Laser Science, Hamburg, ou_persistent22              
3Centre for Structural Systems Biology, Department of Chemistry, University of Hamburg, ou_persistent22              
4Department of Physics, University of Toronto, ou_persistent22              
5Department of Chemistry, University of Toronto, ou_persistent22              

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 Abstract: Serial electron diffraction (SerialED) is an emerging technique, which applies the snapshot data-collection mode of serial X-ray crystallography to three-dimensional electron diffraction (3D Electron Diffraction), forgoing the conventional rotation method. Similarly to serial X-ray crystallography, this approach leads to almost complete absence of radiation damage effects even for the most sensitive samples, and allows for a high level of automation. However, SerialED also necessitates new techniques of data processing, which combine existing pipelines for rotation electron diffraction and serial X-ray crystallography with some more particular solutions for challenges arising in SerialED specifically. Here, we introduce our analysis pipeline for SerialED data, and its implementation using the CrystFEL and diffractem program packages. Detailed examples are provided in extensive supplementary code.

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Language(s): eng - English
 Dates: 2020-10-312021-04-282021-05-19
 Publication Status: Published online
 Pages: -
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 Rev. Type: Peer
 Identifiers: DOI: 10.3389/fmolb.2021.624264
arXiv: 2011.02977
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Project name : This work was funded by the Max Planck Society, the Natural Sciences and Engineering Research Council of Canada (PH, RM.), the Fonds de recherche du Québec (PH), and the BWFGB Israel-Hamburg project LOM 2018 (RB).
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Title: Frontiers in Molecular Biosciences
Source Genre: Journal
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Publ. Info: Schweiz : Frontiers Media
Pages: - Volume / Issue: 8 Sequence Number: 624264 Start / End Page: - Identifier: Other: 2296-889X
Other: http://www.sherpa.ac.uk/romeo/pub/600/
CoNE: https://pure.mpg.de/cone/journals/resource/2296-889X