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  Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum

Li, Y., Kuhn, M., Zukowska-Kasprzyk, J., Hennrich, M. L., Kastritis, P. L., O’Reilly, F. J., et al. (2021). Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum. PLoS One, 16(7): e0254429. doi:10.1371/journal.pone.0254429.

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 Urheber:
Li, Yuanyue1, Autor
Kuhn, Michael1, Autor
Zukowska-Kasprzyk, Joanna1, Autor
Hennrich, Marco L.1, Autor
Kastritis, Panagiotis L.1, Autor
O’Reilly, Francis J.1, Autor
Phapale, Prasad1, Autor
Beck, Martin2, Autor                 
Gavin, Anne-Claude1, Autor
Bork, Peer1, Autor
Affiliations:
1External Organizations, ou_persistent22              
2European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, ou_persistent22              

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Schlagwörter: Adenine, Body weight, Metabolites, Proteasomes, Protein interactions, Protein metabolism, Proteomics, Ribosomes
 Zusammenfassung: Protein–metabolite interactions play an important role in the cell’s metabolism and many methods have been developed to screen them in vitro. However, few methods can be applied at a large scale and not alter biological state. Here we describe a proteometabolomic approach, using chromatography to generate cell fractions which are then analyzed with mass spectrometry for both protein and metabolite identification. Integrating the proteomic and metabolomic analyses makes it possible to identify protein-bound metabolites. Applying the concept to the thermophilic fungus Chaetomium thermophilum, we predict 461 likely protein-metabolite interactions, most of them novel. As a proof of principle, we experimentally validate a predicted interaction between the ribosome and isopentenyl adenine.

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Sprache(n): eng - English
 Datum: 2021-01-072021-06-262021-07-09
 Publikationsstatus: Online veröffentlicht
 Seiten: 13
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1371/journal.pone.0254429
BibTex Citekey: li_coupling_2021
 Art des Abschluß: -

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Titel: PLoS One
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: San Francisco, CA : Public Library of Science
Seiten: - Band / Heft: 16 (7) Artikelnummer: e0254429 Start- / Endseite: - Identifikator: ISSN: 1932-6203
CoNE: https://pure.mpg.de/cone/journals/resource/1000000000277850