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  Optimized analysis for sensitive detection and analysis of single proteins via interferometric scattering microscopy

Mirzaalian Dastjerdi, H., Dahmardeh, M., Gemeinhardt, A., Gholami Mahmoodabadi, R., Köstler, H., & Sandoghdar, V. (2021). Optimized analysis for sensitive detection and analysis of single proteins via interferometric scattering microscopy. Journal of Physics D: Applied Physics, 55: 054002. doi:10.1088/1361-6463/ac2f68.

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 Creators:
Mirzaalian Dastjerdi, Houman1, 2, Author           
Dahmardeh, Mahyar1, Author           
Gemeinhardt, André1, Author           
Gholami Mahmoodabadi, Reza1, Author           
Köstler, Harald2, Author
Sandoghdar, Vahid1, 3, Author           
Affiliations:
1Sandoghdar Division, Max Planck Institute for the Science of Light, Max Planck Society, ou_2364722              
2Lehrstuhl für Informatik 10, Friedrich-Alexander-Universität Erlangen Nürnberg, ou_persistent22              
3Sandoghdar Division, Max-Planck-Zentrum für Physik und Medizin, Max Planck Institute for the Science of Light, Max Planck Society, ou_3596674              

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 Abstract: It has been shown that interferometric detection of Rayleigh scattering (iSCAT) can reach an exquisite sensitivity for label-free detection of nano-matter, down to single proteins. The sensitivity of iSCAT detection is intrinsically limited by shot noise, which can be indefinitely improved by employing higher illumination power or longer integration times. In practice, however, a large speckle-like background and technical issues in the experimental setup limit the attainable signal-to-noise ratio. Strategies and algorithms in data analysis are, thus, crucial for extracting quantitative results from weak signals, e.g. regarding the mass (size) of the detected nano-objects or their positions. In this article, we elaborate on some algorithms for processing iSCAT data and identify some key technical as well as conceptual issues that have to be considered when recording and interpreting the data. The discussed methods and analyses are made available in the extensive python-based platform, PiSCAT.

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 Dates: 2021-10-28
 Publication Status: Published online
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 Identifiers: DOI: 10.1088/1361-6463/ac2f68
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Title: Journal of Physics D: Applied Physics
  Abbreviation : J. Phys. D: Appl. Phys.
Source Genre: Journal
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Publ. Info: Bristol : IOP Publishing
Pages: - Volume / Issue: 55 Sequence Number: 054002 Start / End Page: - Identifier: ISSN: 0022-3727
CoNE: https://pure.mpg.de/cone/journals/resource/0022-3727