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  Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., et al. (2021). Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature Methods, 18, 1304-1316. doi:10.1038/s41592-021-01309-x.

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Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.

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 Creators:
Kawahara, Rebeca1, Author
Chernykh, Anastasia1, Author
Alagesan, Kathirvel2, Author
Bern, Marshall3, Author
Cao, Weiqian4, Author
Chalkley, Robert J.5, Author
Cheng, Kai6, Author
Choo, Matthew S.7, Author
Edwards, Nathan8, 9, Author
Goldman, Radoslav8, 9, 10, Author
Hoffmann, Marcus11, Author              
Hu, Yingwei12, Author
Huang, Yifan13, Author
Kim, Jin Young14, Author
Kletter, Doron3, Author
Liquet, Benoit15, 16, Author
Liu, Mingqi4, Author
Mechref, Yehia13, Author
Meng, Bo17, Author
Neelamegham, Sriram6, Author
Nguyen-Khuong, Terry7, AuthorNilsson, Jonas18, AuthorPap, Adam19, 20, AuthorPark, Gun Wook14, AuthorParker, Benjamin L.21, AuthorPegg, Cassandra L.22, AuthorPenninger, Josef M.23, 24, AuthorPhung, Toan K.22, AuthorPioch, Marcus11, Author              Rapp, Erdmann11, 25, Author              Sakalli, Enes23, AuthorSanda, Miloslav8, 10, AuthorSchulz, Benjamin L.22, AuthorScott, Nichollas E.26, AuthorSofronov, Georgy15, AuthorStadlmann, Johannes23, AuthorVakhrushev, Sergey Y.27, AuthorWoo, Christina M.28, AuthorWu, Hung-Yi28, AuthorYang, Pengyuan4, AuthorYing, Wantao17, AuthorZhang, Hui12, AuthorZhang, Yong17, AuthorZhao, Jingfu13, AuthorZaia, Joseph29, AuthorHaslam, Stuart M.30, AuthorPalmisano, Giuseppe31, AuthorYoo, Jong Shin14, 32, AuthorLarson, Göran33, AuthorKhoo, Kai-Hooi34, AuthorMedzihradszky, Katalin F.5, 19, AuthorKolarich, Daniel2, AuthorPacker, Nicolle H.1, 2, 35, AuthorThaysen-Andersen, Morten1, 35, Author more..
Affiliations:
1Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia, ou_persistent22              
2Institute for Glycomics, Griffith University Gold Coast Campus, Southport, QLD, Australia, ou_persistent22              
3Protein Metrics Inc., Cupertino, CA, USA, ou_persistent22              
4Institutes of Biomedical Sciences, and the NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai, China, ou_persistent22              
5UCSF, School of Pharmacy, Department of Pharmaceutical Chemistry, San Francisco, CA, USA, ou_persistent22              
6State University of New York, Buffalo, NY, USA, ou_persistent22              
7Analytics Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Singapore, ou_persistent22              
8Clinical and Translational Glycoscience Research Center (CTGRC), Georgetown University, Washington, DC, USA, ou_persistent22              
9Department of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington, DC, USA, ou_persistent22              
10Department of Oncology, Georgetown University, Washington, DC, USA, ou_persistent22              
11Bioprocess Engineering, Max Planck Institute for Dynamics of Complex Technical Systems, Max Planck Society, ou_1738140              
12Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA, ou_persistent22              
13Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA, ou_persistent22              
14Research Center of Bioconvergence Analysis, Korea Basic Science Institute, Daejeon, Republic of Korea, ou_persistent22              
15Department of Mathematics and Statistics, Macquarie University, Sydney, NSW, Australia, ou_persistent22              
16CNRS, Laboratoire de Mathématiques et de leurs Applications de PAU, E2S-UPPA, Pau, Franc, ou_persistent22              
17State Key Laboratory of Proteomics, Beijing Institute of Lifeomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing, China, ou_persistent22              
18Proteomics Core Facility, Sahlgrenska academy, University of Gothenburg, Gothenburg, Sweden, ou_persistent22              
19BRC, Laboratory of Proteomics Research, Szeged, Hungary, ou_persistent22              
20Doctoral School in Biology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary, ou_persistent22              
21Department of Anatomy and Physiology, University of Melbourne, Melbourne, VIC, Australia, ou_persistent22              
22School of Chemistry and Molecular Biosciences, University of Queensland, Queensland, QLD, Australia, ou_persistent22              
23IMBA, Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Vienna, Austria, ou_persistent22              
24Department of Medical Genetics, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada, ou_persistent22              
25glyXera GmbH, Magdeburg, Germany, ou_persistent22              
26Department of Microbiology and Immunology, University of Melbourne, Melbourne, VIC, Australia, ou_persistent22              
27Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark, ou_persistent22              
28Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA, ou_persistent22              
29Department of Biochemistry, Boston University Medical Campus, Boston, MA, USA, ou_persistent22              
30Department of Life Sciences, Imperial College London, London, UK, ou_persistent22              
31Instituto de Ciências Biomédicas, Departamento de Parasitologia, Universidade de São Paulo, São Paulo, SP, Brazil, ou_persistent22              
32Graduate School of Analytical Science and Technology, Chungnam National University, Daejeon, Republic of Korea, ou_persistent22              
33Department of Laboratory Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden, ou_persistent22              
34Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ou_persistent22              
35Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia, ou_persistent22              

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Language(s): eng - English
 Dates: 2021
 Publication Status: Published in print
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Degree: -

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Title: Nature Methods
  Other : Nature Methods
Source Genre: Journal
 Creator(s):
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Publ. Info: New York, NY : Nature Pub. Group
Pages: - Volume / Issue: 18 Sequence Number: - Start / End Page: 1304 - 1316 Identifier: ISSN: 1548-7091
CoNE: https://pure.mpg.de/cone/journals/resource/111088195279556