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  Augmenting Genetic Algorithms with Deep Neural Networks for Exploring the Chemical Space

Nigam, A., Friederich, P., Krenn, M., & Aspuru-Guzik, A. (2020). Augmenting Genetic Algorithms with Deep Neural Networks for Exploring the Chemical Space. ICLR 2020.

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https://arxiv.org/abs/1909.11655 (Postprint)
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 Creators:
Nigam, AkshatKumar 1, Author
Friederich, Pascal 1, 2, Author
Krenn, Mario1, 3, 4, 5, Author           
Aspuru-Guzik, Alán1, 4, 5, 6, Author
Affiliations:
1Department of Computer Science, University of Toronto, Canada, ou_persistent22              
2Institute of Nanotechnology, Karlsruhe Institute of Technology, Germany., ou_persistent22              
3External Organizations, ou_persistent22              
4Department of Chemistry, University of Toronto, Canada, ou_persistent22              
5Vector Institute for Artificial Intelligence, Toronto, Canada., ou_persistent22              
6Canadian Institute for Advanced Research (CIFAR) Senior Fellow, Toronto, Canada, ou_persistent22              

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 Abstract: Challenges in natural sciences can often be phrased as optimization problems. Machine learning techniques have recently been applied to solve such problems. One example in chemistry is the design of tailor-made organic materials and molecules, which requires efficient methods to explore the chemical space. We present a genetic algorithm (GA) that is enhanced with a neural network (DNN) based discriminator model to improve the diversity of generated molecules and at the same time steer the GA. We show that our algorithm outperforms other generative models in optimization tasks. We furthermore present a way to increase interpretability of genetic algorithms, which helped us to derive design principles.

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Language(s): eng - English
 Dates: 2020-01-152020-01-152020-01-152020-01-152020-01-152020-01-15
 Publication Status: Issued
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 Rev. Type: Peer
 Identifiers: arXiv: 1909.11655
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Title: ICLR 2020
Source Genre: Journal
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