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  Roadmap for naming uncultivated Archaea and Bacteria

Murray, A. E., Freudenstein, J., Gribaldo, S., Hatzenpichler, R., Hugenholtz, P., Kaempfer, P., et al. (2020). Roadmap for naming uncultivated Archaea and Bacteria. NATURE MICROBIOLOGY, 5(8), 987-994. doi:10.1038/s41564-020-0733-x.

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Murray, Alison E.1, Autor
Freudenstein, John1, Autor
Gribaldo, Simonetta1, Autor
Hatzenpichler, Roland1, Autor
Hugenholtz, Philip1, Autor
Kaempfer, Peter1, Autor
Konstantinidis, Konstantinos T.1, Autor
Lane, Christopher E.1, Autor
Papke, R. Thane1, Autor
Parks, Donovan H.1, Autor
Rossello-Mora, Ramon, Autor           
Stott, Matthew B.1, Autor
Sutcliffe, Iain C.1, Autor
Thrash, J. Cameron1, Autor
Venter, Stephanus N.1, Autor
Whitman, William B.1, Autor
Acinas, Silvia G.1, Autor
Amann I, Rudolf1, Autor
Anantharaman, Karthik1, Autor
Armengaud, Jean1, Autor
Baker, Brett J.1, AutorBarco, Roman A.1, AutorBode, Helge B.2, 3, Autor           Boyd, Eric S.1, AutorBrady, Carrie L.1, AutorCarini, Paul1, AutorChain, Patrick S. G.1, AutorColman, Daniel R.1, AutorDeAngelis, Kristen M.1, Autorde los Rios, Maria Asuncion1, AutorEstrada-de los Santos, Paulina1, AutorDunlap, Christopher A.1, AutorEisen, Jonathan A.1, AutorEmerson, David1, AutorEttema, Thijs J. G.1, AutorEveillard, Damien1, AutorGirguis, Peter R.1, AutorHentschel, Ute1, AutorHollibaugh, James T.1, AutorHug, Laura A.1, AutorInskeep, William P.1, AutorIvanova, Elena P.1, AutorKlenk, Hans-Peter1, AutorLi, Wen-Jun1, AutorLloyd, Karen G.1, AutorLffler, Frank E.1, AutorMakhalanyane, Thulani P.1, AutorMoser, Duane P.1, AutorNunoura, Takuro1, AutorPalmer, Marike1, AutorParro, Victor1, AutorPedros-Alio, Carlos1, AutorProbst, Alexander J.1, AutorSmits, Theo H. M.1, AutorSteen, Andrew D.1, AutorSteenkamp, Emma T.1, AutorSpang, Anja1, AutorStewart, Frank J.1, AutorTiedje, James M.1, AutorVandamme, Peter1, AutorWagner, Michael, Autor           Wang, Feng-Ping1, AutorHedlund, Brian P.1, AutorReysenbach, Anna-Louise1, Autor mehr..
Affiliations:
1external, ou_persistent22              
2Natural Product Function and Engineering, Department of Natural Products in Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266308              
3Goethe-Universität Frankfurt am Main, External Organizations, ou_421891              

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 Zusammenfassung: The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea and Bacteria, bringing with it a need to develop guidelines for nomenclature of uncultivated microorganisms. The International Code of Nomenclature of Prokaryotes (ICNP) only recognizes cultures as 'type material', thereby preventing the naming of uncultivated organisms. In this Consensus Statement, we propose two potential paths to solve this nomenclatural conundrum. One option is the adoption of previously proposed modifications to the ICNP to recognize DNA sequences as acceptable type material; the other option creates a nomenclatural code for uncultivated Archaea and Bacteria that could eventually be merged with the ICNP in the future. Regardless of the path taken, we believe that action is needed now within the scientific community to develop consistent rules for nomenclature of uncultivated taxa in order to provide clarity and stability, and to effectively communicate microbial diversity.
In this Consensus Statement, the authors discuss the issue of naming uncultivated prokaryotic microorganisms, which currently do not have a formal nomenclature system due to a lack of type material or cultured representatives, and propose two recommendations including the recognition of DNA sequences as type material.

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 Datum: 2020
 Publikationsstatus: Erschienen
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 Identifikatoren: ISI: 000538968300003
DOI: 10.1038/s41564-020-0733-x
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Titel: NATURE MICROBIOLOGY
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 5 (8) Artikelnummer: - Start- / Endseite: 987 - 994 Identifikator: ISSN: 2058-5276