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  Observation of a single protein by ultrafast X-ray diffraction

Ekeberg, T., Assalauova, D., Bielecki, J., Boll, R., Daurer, B. J., Eichacker, L. A., et al. (2024). Observation of a single protein by ultrafast X-ray diffraction. Light: Science & Applications, 13: 15. doi:10.1038/s41377-023-01352-7.

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 Creators:
Ekeberg, T.1, Author
Assalauova, D.1, Author
Bielecki, J.1, Author
Boll, R.1, Author
Daurer, B. J.1, Author
Eichacker, L. A.1, Author
Franken, L. E.1, Author
Galli, D. E.1, Author
Gelisio, L.1, Author
Gumprecht, L.1, Author
Gunn, L. H.1, Author
Hajdu, J.1, Author
Hartmann, R.1, Author
Hasse, D.1, Author
Ignatenko, A.1, Author
Koliyadu, J.1, Author
Kulyk, O.1, Author
Kurta, R.1, Author
Kuster, M.1, Author
Lugmayr, W.1, Author
Lübke, J.1, AuthorMancuso, A. P.1, AuthorMazza, T.1, AuthorNettelblad, C.1, AuthorOvcharenko, Y.1, AuthorRivas, D. E.1, AuthorRose, M.1, AuthorSamanta, A. K.1, AuthorSchmidt, P.1, AuthorSobolev, E.1, AuthorTimneanu, N.1, AuthorUsenko, S.1, AuthorWestphal, D.1, AuthorWollweber, T.2, 3, 4, 5, Author           Worbs, L.1, AuthorXavier, P. L.1, AuthorYousef, H.1, AuthorAyyer, K.2, 4, 5, Author           Chapman, H. N.1, AuthorSellberg, J. A.1, AuthorSeuring, C.1, AuthorVartanyants, I. A.1, AuthorKüpper, J.1, AuthorMeyer, M.1, AuthorMaia, F. R.N.C.1, Author more..
Affiliations:
1external, ou_persistent22              
2The Hamburg Center for Ultrafast Imaging, Universität Hamburg, ou_persistent22              
3Department of Physics, Universität Hamburg, ou_persistent22              
4Computational Nanoscale Imaging, Condensed Matter Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_3012829              
5Center for Free-Electron Laser Science, Hamburg, ou_persistent22              

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 Abstract: The idea of using ultrashort X-ray pulses to obtain images of single proteins frozen in time has fascinated and inspired many. It was one of the arguments for building X-ray free-electron lasers. According to theory, the extremely intense pulses provide sufficient signal to dispense with using crystals as an amplifier, and the ultrashort pulse duration permits capturing the diffraction data before the sample inevitably explodes. This was first demonstrated on biological samples a decade ago on the giant mimivirus. Since then, a large collaboration has been pushing the limit of the smallest sample that can be imaged. The ability to capture snapshots on the timescale of atomic vibrations, while keeping the sample at room temperature, may allow probing the entire conformational phase space of macromolecules. Here we show the first observation of an X-ray diffraction pattern from a single protein, that of Escherichia coli GroEL which at 14 nm in diameter is the smallest biological sample ever imaged by X-rays, and demonstrate that the concept of diffraction before destruction extends to single proteins. From the pattern, it is possible to determine the approximate orientation of the protein. Our experiment demonstrates the feasibility of ultrafast imaging of single proteins, opening the way to single-molecule time-resolved studies on the femtosecond timescale.

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Language(s): eng - English
 Dates: 2023-12-052023-11-032023-12-062024-01-12
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1038/s41377-023-01352-7
 Degree: -

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Project name : We acknowledge European XFEL in Schenefeld, Germany, for provision of X-ray free-electron laser beam time at the SQS instrument and would like to thank the staff for their assistance. We acknowledge the use of the XBI biological sample preparation laboratory, enabled by the XBI User Consortium. We acknowledge valuable discussions with Erik G. Marklund. The results of the work were obtained using Maxwell computational resources operated at Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany. Part of this work was performed at the Multi-User CryoEM Facility at the Centre for Structural Systems Biology, Hamburg, supported by the Universität Hamburg and DFG grant numbers (INST 152/772-1|152/774-1|152/775-1|152/776-1|152/777-1 FUGG). We acknowledge the support of funding from: Cluster of Excellence ‘CUI: Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) – EXC 2056 – project ID 390715994; ERC-2013-CoG COMOTION 614507; NFR 240770; Fellowship from the Joachim Herz Stiftung (P.L.X.). P.L.X. and H.N.C. acknowledge support from the Human Frontiers Science Program (RGP0010/2017). J.H. acknowledges support from the European Development Fund: Structural dynamics of biomolecular systems (ELIBIO) (CZ.02.1.01/0.0/0.0/15_003/ 0000447) EMBO long-term fellowship (ALTF 356-2018) awarded to L.E.F.; the Röntgen-Ångström Cluster (2015-06107 and 2019-06092); the Swedish Research Council (2017-05336, 2018-00234 and 2019-03935); the Swedish Foundation for Strategic Research (ITM17-0455). Open access funding provided by Uppsala University.
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Title: Light: Science & Applications
Source Genre: Journal
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Publ. Info: London : Nature Publ. Group
Pages: - Volume / Issue: 13 Sequence Number: 15 Start / End Page: - Identifier: ISSN: 2047-7538
CoNE: https://pure.mpg.de/cone/journals/resource/2047-7538