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  Nextstrain: real-time tracking of pathogen evolution

Hadfield, J., Megill, C., Bell, S., Huddleston, J., Potter, B., Callender, C., et al. (2018). Nextstrain: real-time tracking of pathogen evolution. Bioinformatics, 34(23), 4121-4123. doi:10.1093/bioinformatics/bty407.

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 Creators:
Hadfield, J, Author
Megill, C, Author
Bell, SM, Author
Huddleston, J, Author
Potter, B, Author
Callender, C, Author
Sagulenko, P1, Author           
Bedford, T, Author
Neher, RA1, Author           
Affiliations:
1Research Group Evolutionary Dynamics and Biophysics, Max Planck Institute for Developmental Biology, Max Planck Society, ou_3377926              

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 Abstract: Understanding the spread and evolution of pathogens is important for effective public health measures and surveillance. Nextstrain consists of a database of viral genomes, a bioinformatics pipeline for phylodynamics analysis, and an interactive visualization platform. Together these present a real-time view into the evolution and spread of a range of viral pathogens of high public health importance. The visualization integrates sequence data with other data types such as geographic information, serology, or host species. Nextstrain compiles our current understanding into a single accessible location, open to health professionals, epidemiologists, virologists and the public alike.

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 Dates: 2018-12
 Publication Status: Issued
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1093/bioinformatics/bty407
PMID: 29790939
 Degree: -

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Title: Bioinformatics
Source Genre: Journal
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Publ. Info: Oxford : Oxford University Press
Pages: - Volume / Issue: 34 (23) Sequence Number: - Start / End Page: 4121 - 4123 Identifier: ISSN: 1367-4803
CoNE: https://pure.mpg.de/cone/journals/resource/954926969991