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  Contradictory phylogenetic signals in the laurasiatheria anomaly zone

Doronina, L., Hughes, G. M., Moreno-Santillan, D., Lawless, C., Lonergan, T., Ryan, L., et al. (2022). Contradictory phylogenetic signals in the laurasiatheria anomaly zone. Genes, 13(5): 766. doi:10.3390/genes13050766.

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 Creators:
Doronina, Liliya1, Author
Hughes, Graham M.2, Author
Moreno-Santillan, Diana3, 4, Author
Lawless, Colleen2, Author
Lonergan, Tadhg2, Author
Ryan, Louise2, Author
Jebb, David5, Author
Kirilenko, Bogdan M.6, 7, 8, Author
Korstian, Jennifer M.3, Author
Dávalos, Liliana M.9, Author
Vernes, Sonja C.10, Author           
Myers, Eugene W.11, Author
Teeling, Emma C.2, Author
Hiller, Michael6, 7, 8, Author
Jermiin, Lars S.2, 12, Author
Schmitz, Jürgen1, Author
Springer, Mark S.4, Author
Ray, David A.3, Author
Affiliations:
1University of Münster, Münster, Germany, ou_persistent22              
2University College Dublin, Dublin, Ireland, ou_persistent22              
3Texas Tech University, Texas, USA, ou_persistent22              
4University of California, California, USA, ou_persistent22              
5Max Planck Institute for the Physics of Complex Systems, Max Planck Society, ou_2117288              
6LOEWE Centre for Translational Biodiversity Genomics, Frankfurt, Germany, ou_persistent22              
7Senckenberg Research Institute, Frankfurt, Germany, ou_persistent22              
8Goethe-University, Frankfurt, Germany, ou_persistent22              
9Stony Brook University, NY, USA, ou_persistent22              
10Neurogenetics of Vocal Communication Group, MPI for Psycholinguistics, Max Planck Society, ou_2231636              
11Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society, ou_2340692              
12Australian National University, Canberra, Australia, ou_persistent22              

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 Abstract: Relationships among laurasiatherian clades represent one of the most highly disputed topics in mammalian phylogeny. In this study, we attempt to disentangle laurasiatherian interordinal relationships using two independent genome-level approaches: (1) quantifying retrotransposon presence/absence patterns, and (2) comparisons of exon datasets at the levels of nucleotides and amino acids. The two approaches revealed contradictory phylogenetic signals, possibly due to a high level of ancestral incomplete lineage sorting. The positions of Eulipotyphla and Chiroptera as the first and second earliest divergences were consistent across the approaches. However, the phylogenetic relationships of Perissodactyla, Cetartiodactyla, and Ferae, were contradictory. While retrotransposon insertion analyses suggest a clade with Cetartiodactyla and Ferae, the exon dataset favoured Cetartiodactyla and Perissodactyla. Future analyses of hitherto unsampled laurasiatherian lineages and synergistic analyses of retrotransposon insertions, exon and conserved intron/intergenic sequences might unravel the conflicting patterns of relationships in this major mammalian clade.

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Language(s): eng - English
 Dates: 2022-04-212022-04-26
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.3390/genes13050766
 Degree: -

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Title: Genes
Source Genre: Journal
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Publ. Info: Basel, Switzerland : MDPI AG
Pages: - Volume / Issue: 13 (5) Sequence Number: 766 Start / End Page: - Identifier: ISSN: 2073-4425
CoNE: https://pure.mpg.de/cone/journals/resource/2073-4425