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  Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa

Dahmardeh, M., Mirzaalian Dastjerdi, H., Mazal, H., Köstler, H., & Sandoghdar, V. (2023). Self-supervised machine learning pushes the sensitivity limit in label-free detection of single proteins below 10 kDa. Nature Methods, 20, 442-447. doi:10.1038/s41592-023-01778-2.

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 Creators:
Dahmardeh, Mahyar1, 2, Author           
Mirzaalian Dastjerdi, Houman1, Author           
Mazal, Hisham1, 2, Author           
Köstler, Harald3, Author
Sandoghdar, Vahid1, 2, 3, Author           
Affiliations:
1Sandoghdar Division, Max Planck Institute for the Science of Light, Max Planck Society, ou_2364722              
2Max-Planck-Zentrum für Physik und Medizin, Max Planck Institute for the Science of Light, Max Planck Society, ou_3164414              
3Friedrich-Alexander-Univerisität Erlangen-Nürnberg, ou_persistent22              

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 Abstract: Interferometric scattering (iSCAT) microscopy is a label-free optical method capable of detecting single proteins, localizing
their binding positions with nanometer precision, and measuring their mass. In the ideal case, iSCAT is limited by shot noise
so that collection of more photons should allow its detection sensitivity to biomolecules of arbitrarily low mass. However, a
number of technical noise sources combined with speckle-like background fluctuations have restricted the detection limit in
iSCAT. Here, we show that an unsupervised machine learning isolation forest algorithm for anomaly detection pushes the
mass sensitivity limit by a factor of four to below 10 kDa. We implement this scheme both with a user-defined feature matrix
and a self-supervised FastDVDNet and validate our results with correlative fluorescence images recorded in total internal
reflection mode. Our work opens the door to the optical detection of small traces of disease markers such as alpha-synuclein,
chemokines, and cytokines.

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 Dates: 2023-02-27
 Publication Status: Published online
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 Identifiers: DOI: 10.1038/s41592-023-01778-2
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Title: Nature Methods
  Other : Nature Methods
Source Genre: Journal
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Publ. Info: New York, NY : Nature Publishing Group
Pages: - Volume / Issue: 20 Sequence Number: - Start / End Page: 442 - 447 Identifier: ISSN: 1548-7091
CoNE: https://pure.mpg.de/cone/journals/resource/111088195279556