Deutsch
 
Hilfe Datenschutzhinweis Impressum
  DetailsucheBrowse

Datensatz

DATENSATZ AKTIONENEXPORT
  Microscopy-BIDS: An extension to the brain imaging data structure for microscopy data

Bourget, M.-H., Kamentsky, L., Ghosh, S. S., Mazzamuto, G., Lazari, A., Markiewicz, C. J., et al. (2022). Microscopy-BIDS: An extension to the brain imaging data structure for microscopy data. Frontiers in Neuroscience, 16: 871228. doi:10.3389/fnins.2022.871228.

Item is

Basisdaten

einblenden: ausblenden:
Genre: Zeitschriftenartikel

Dateien

einblenden: Dateien
ausblenden: Dateien
:
Bourget_2022.pdf (Verlagsversion), 863KB
Name:
Bourget_2022.pdf
Beschreibung:
-
OA-Status:
Gold
Sichtbarkeit:
Öffentlich
MIME-Typ / Prüfsumme:
application/pdf / [MD5]
Technische Metadaten:
Copyright Datum:
-
Copyright Info:
-

Externe Referenzen

einblenden:

Urheber

einblenden:
ausblenden:
 Urheber:
Bourget, Marie-Hélène1, Autor
Kamentsky, Lee2, Autor
Ghosh, Satrajit S.3, 4, Autor
Mazzamuto, Giacomo5, 6, Autor
Lazari, Alberto7, Autor
Markiewicz, Christopher J.8, Autor
Oostenveld, Robert9, 10, Autor
Niso, Guiomar11, Autor
Halchenko, Yaroslav O.12, Autor
Lipp, Ilona13, Autor           
Takerkart, Sylvain14, Autor
Toussaint, Paule-Joanne15, Autor
Khan, Ali R.16, Autor
Nilsonne, Gustav17, 18, Autor
Castelli, Filippo Maria6, Autor
Cohen-Adad, Julien1, 19, 20, Autor
Affiliations:
1NeuroPoly Lab, Institute of Biomedical Engineering, École Polytechnique de Montréal, QC, Canada, ou_persistent22              
2Kwanghun Chung Lab, Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA, ou_persistent22              
3McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA, ou_persistent22              
4Department of Otolaryngology-Head and Neck Surgery, Harvard Medical School, Boston, MA, USA, ou_persistent22              
5National Institute of Optics, Sesto Fiorentino, Italy, ou_persistent22              
6European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy, ou_persistent22              
7Nuffield Department Clinical Neurosciences, FMRIB Centre, University of Oxford, United Kingdom, ou_persistent22              
8Department of Psychology, Stanford University, CA, USA, ou_persistent22              
9Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands, ou_persistent22              
10NatMEG, Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden, ou_persistent22              
11Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA, ou_persistent22              
12Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA, ou_persistent22              
13Department Neurophysics (Weiskopf), MPI for Human Cognitive and Brain Sciences, Max Planck Society, ou_2205649              
14Institut des Neurosciences de la Timone, Aix-Marseille Université, France, ou_persistent22              
15Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montréal, QC, Canada, ou_persistent22              
16Robarts Research Institute, University of Western Ontario, London, ON, Canada, ou_persistent22              
17Department of Clinical Neuroscience, Karolinska Institute, Stockholm, Sweden, ou_persistent22              
18Swedish National Data Service, University of Gothenburg, Sweden, ou_persistent22              
19Mila – Quebec Artificial Intelligence Institute, Montréal, QC, Canada, ou_persistent22              
20Unité de neuroimagerie fonctionnelle, Centre de recherche de l'Institut universitaire de gériatrie de Montréal, QC, Canada, ou_persistent22              

Inhalt

einblenden:
ausblenden:
Schlagwörter: Data sharing; Data structure; Microscopy; Open science; Specification; Standardization
 Zusammenfassung: The Brain Imaging Data Structure (BIDS) is a specification for organizing, sharing, and archiving neuroimaging data and metadata in a reusable way. First developed for magnetic resonance imaging (MRI) datasets, the community-led specification evolved rapidly to include other modalities such as magnetoencephalography, positron emission tomography, and quantitative MRI (qMRI). In this work, we present an extension to BIDS for microscopy imaging data, along with example datasets. Microscopy-BIDS supports common imaging methods, including 2D/3D, ex/in vivo, micro-CT, and optical and electron microscopy. Microscopy-BIDS also includes comprehensible metadata definitions for hardware, image acquisition, and sample properties. This extension will facilitate future harmonization efforts in the context of multi-modal, multi-scale imaging such as the characterization of tissue microstructure with qMRI.

Details

einblenden:
ausblenden:
Sprache(n): eng - English
 Datum: 2022-02-072022-03-012022-04-19
 Publikationsstatus: Online veröffentlicht
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: -
 Identifikatoren: DOI: 10.3389/fnins.2022.871228
Anderer: eCollection 2022
PMID: 35516811
PMC: PMC9063519
 Art des Abschluß: -

Veranstaltung

einblenden:

Entscheidung

einblenden:

Projektinformation

einblenden: ausblenden:
Projektname : -
Grant ID : 950-230815
Förderprogramm : -
Förderorganisation : Canada Research Chair in Quantitative Magnetic Resonance Imaging
Projektname : -
Grant ID : CIHR FDN-143263
Förderprogramm : -
Förderorganisation : Canadian Institute of Health Research (CIHR)
Projektname : -
Grant ID : 32454; 34824
Förderprogramm : -
Förderorganisation : Canada Foundation for Innovation (CFI)
Projektname : -
Grant ID : 322736
Förderprogramm : -
Förderorganisation : Fonds de Recherche du Québec–Santé
Projektname : -
Grant ID : RGPIN-2019-07244
Förderprogramm : -
Förderorganisation : Natural Sciences and Engineering Research Council of Canada (NSERC)
Projektname : -
Grant ID : 5886, 35450
Förderprogramm : -
Förderorganisation : Quebec BioImaging Network
Projektname : -
Grant ID : R24MH117295; 5R24MH117179
Förderprogramm : -
Förderorganisation : US BRAIN Initiative
Projektname : -
Grant ID : P41EB019936
Förderprogramm : -
Förderorganisation : National Institutes of Health (NIH)
Projektname : -
Grant ID : 203139/Z/16/Z
Förderprogramm : -
Förderorganisation : Wellcome Trust
Projektname : -
Grant ID : ANR 19-DATA-0021-01
Förderprogramm : -
Förderorganisation : French Agence Nationale de la Recherche (ANR)
Projektname : -
Grant ID : U01MH117023
Förderprogramm : -
Förderorganisation : General Hospital Corporation Center of the National Institutes of Health

Quelle 1

einblenden:
ausblenden:
Titel: Frontiers in Neuroscience
  Andere : Front Neurosci
Genre der Quelle: Zeitschrift
 Urheber:
Affiliations:
Ort, Verlag, Ausgabe: Lausanne, Switzerland : Frontiers Research Foundation
Seiten: - Band / Heft: 16 Artikelnummer: 871228 Start- / Endseite: - Identifikator: ISSN: 1662-4548
ISSN: 1662-453X
CoNE: https://pure.mpg.de/cone/journals/resource/1662-4548