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  The Arabidopsis T-DNA mutant SALK_008491 carries a 14-kb deletion on chromosome 3 that provides rare insights into the plant response to dynamic light stress

Lopez, L. S., Völkner, C., Day, P. M., Lewis, C. M., Lewis, C. L., Schneider, D., et al. (2022). The Arabidopsis T-DNA mutant SALK_008491 carries a 14-kb deletion on chromosome 3 that provides rare insights into the plant response to dynamic light stress. Plant Direct, 6(7): e429. doi:10.1002/pld3.429.

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Genre: Journal Article
Alternative Title : Plant Direct

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 Creators:
Lopez, Laura S.1, Author
Völkner, Carsten1, Author
Day, Philip M.1, Author
Lewis, Chance M.1, Author
Lewis, Chase L.1, Author
Schneider, Dominik1, Author
Correa Galvis, V.2, Author           
Cruz, Jeffrey A.1, Author
Armbruster, U.2, Author           
Kramer, David M.1, Author
Kunz, Hans-Henning1, Author
Affiliations:
1external, ou_persistent22              
2Regulation of Photosynthesis, Department Bock, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, ou_2205653              

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Free keywords: chloroplast, forward genetics, phenotyping, photosynthesis, redox poise, T-DNA insertion mutants
 Abstract: Abstract In nature, plants experience rapid changes in light intensity and quality throughout the day. To maximize growth, they have established molecular mechanisms to optimize photosynthetic output while protecting components of the light-dependent reaction and CO2 fixation pathways. Plant phenotyping of mutant collections has become a powerful tool to unveil the genetic loci involved in environmental acclimation. Here, we describe the phenotyping of the transfer-DNA (T-DNA) insertion mutant line SALK_008491, previously known as nhd1-1. Growth in a fluctuating light regime caused a loss in growth rate accompanied by a spike in photosystem (PS) II damage and increased non-photochemical quenching (NPQ). Interestingly, an independent nhd1 null allele did not recapitulate the NPQ phenotype. Through bulk sequencing of a backcrossed segregating F2 pool, we identified an ~14-kb large deletion on chromosome 3 (Chr3) in SALK_008491 affecting five genes upstream of NHD1. Besides NHD1, which encodes for a putative plastid Na+/H+ antiporter, the stromal NAD-dependent D-3-phosphoglycerate dehydrogenase 3 (PGDH3) locus was eradicated. Although some changes in the SALK_008491 mutant's photosynthesis can be assigned to the loss of PGDH3, our follow-up studies employing respective single mutants and complementation with overlapping transformation-competent artificial chromosome (TAC) vectors reveal that the exacerbated fluctuating light sensitivity in SALK_008491 mutants result from the simultaneous loss of PGDH3 and NHD1. Altogether, the data obtained from this large deletion-carrying mutant provide new and unintuitive insights into the molecular mechanisms that function to protect the photosynthetic machinery. Moreover, our study renews calls for caution when setting up reverse genetic studies using T-DNA lines. Although second-site insertions, indels, and SNPs have been reported before, large deletion surrounding the insertion site causes yet another problem. Nevertheless, as shown through this research, such unpredictable genetic events following T-DNA mutagenesis can provide unintuitive insights that allow for understanding complex phenomena such as the plant acclimation to dynamic high light stress.

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Language(s): eng - English
 Dates: 2022-07-222022-07-20
 Publication Status: Published in print
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1002/pld3.429
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Title: Plant Direct
Source Genre: Journal
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Publ. Info: Hoboken, NJ : Wiley
Pages: - Volume / Issue: 6 (7) Sequence Number: e429 Start / End Page: - Identifier: ISSN: 2475-4455
CoNE: https://pure.mpg.de/cone/journals/resource/2475-4455