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  StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain

Grandjean, J., Desrosiers-Gregoire, G., Anckaerts, C., Angeles-Valdez, D., Ayad, F., Barrière, D., et al. (submitted). StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain.

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Grandjean, J, Autor
Desrosiers-Gregoire, G, Autor
Anckaerts, C, Autor
Angeles-Valdez, D, Autor
Ayad, F, Autor
Barrière, DA, Autor
Blockx, I, Autor
Bortel, AB, Autor
Broadwater, M, Autor
Cardoso, BM, Autor
Célestine, M, Autor
Chavez-Negrete, JE, Autor
Choi, S1, Autor           
Christiaen, E, Autor
Clavijo, P, Autor
Colon-Perez, L, Autor
Cramer, S, Autor
Daniele, T, Autor
Dempsey, E, Autor
Diao, Y, Autor
Doelemeyer, A, AutorDopfel, D, Autor Dvořáková, L, AutorFalfán-Melgoza, C, AutorFernandes, FF, AutorFowler, CF, AutorFuentes-Ibañez, A, AutorGarin, C, AutorGelderman, E, AutorGolden, Carla EM, AutorGuo, Chao CG, AutorHenckens, Marloes JAG, AutorHennessy, Lauren A, AutorHerman, Peter, AutorHofwijks, Nita, AutorHorien, Corey, AutorIonescu, Tudor M, AutorJones, Jolyon, AutorKaesser, Johannes, AutorKim, Eugene, AutorLambers, Henriette, AutorLazari, Alberto, AutorLee, Sung-Ho, AutorLillywhite, Amanda, AutorLiu, Yikang, AutorLiu, Yanyan Y, AutorLópez-Castro, Alejandra, AutorLópez-Gil, Xavier, AutorMa, Zilu, AutorMacNicol, Eilidh, AutorMadularu, Dan, AutorMandino, Francesca, AutorMarciano, Sabina, AutorMcAuslan, Matthew J, AutorMcCunn, Patrick, AutorMcIntosh, Alison, AutorMeng, Xianzong, AutorMeyer-Baese, Lisa, AutorMissault, Stephan, AutorMoro, Federico, AutorNaessens, Daphne, AutorNava-Gomez, Laura J, AutorNonaka, Hiroi, AutorOrtiz, Juan J, AutorPaasonen, Jaakko, AutorPeeters, Lore M, AutorPereira, M, AutorPerez, Pablo D, AutorPompilus, Marjory, AutorPrior, Malcolm, AutorRakhmatullin, Rustam, AutorReimann, Henning M, AutorReinwald, Jonathan, Autorde Rio, Rodrigo Triana, AutorRivera-Olvera, Alejandro, AutorRuiz-Pérez, Daniel, AutorRusso, Gabriele, AutorRutten, Tobias J, AutorRyoke, Rie, AutorSack, Markus, AutorSalvan, Piergiorgio, AutorSanganahalli, Basavaraju G, AutorSchroeter, Aileen, AutorSeewoo, Bhedita J, AutorSelingue, Erwan, AutorSeuwen, Aline, AutorShi, Bowen, AutorSirmpilatze, Nikoloz, AutorSmith, Joanna AB, AutorSmith, Corrie, AutorSobczak, F1, Autor           Stenroos, Petteri J, AutorStraathof, Milou, AutorStrobelt, Sandra, AutorSumiyoshi, Akira, AutorTakahashi, K1, Autor           Torres-Garcia, ME, AutorTudela, Raul, Autorvan den Berg, Monica, Autorvan der Marel, Kajo, Autorvan Hout, Aran TB, AutorVertullo, Roberta, AutorVidal, Benjamin, AutorVrooman, Roel M, AutorWang, Victora X, AutorWank, Isabel, AutorWatson, David JG, AutorYin, Ting, AutorZhang, Yongzhi, AutorZurbruegg, Stefan, AutorAchard, Sophie, AutorAlcauter, Sarael, AutorAuer, Dorothee P, AutorBarbier, Emmanuel L, AutorBaudewig, J, AutorBeckmann, Christian F, AutorBeckmann, Nicolau, AutorBecq, Guillaume JPC, AutorBlezer, Erwin LA, AutorBolbos, Radu, AutorBoretius, Susann, AutorBouvard, Sandrine, AutorBudinger, Eike, AutorBuxbaum, Joseph D, AutorCash, Diana, AutorChapman, Victoria, AutorChuang, Kai-Hsiang, AutorCiobanu, Luisa, AutorCoolen, Bram, AutorDalley, Jeffrey W, AutorDhenain, Marc, AutorDijkhuizen, Rick M, AutorEsteban, Oscar, AutorFaber, Cornelius, AutorFebo, Marcelo, AutorFeindel, Kirk W, AutorForloni, Gianluigi, AutorFouquet, Jérémie, AutorGarza-Villarreal, Eduardo A, AutorGass, Natalia, AutorGlennon, Jeffrey C, AutorGozzi, Alessandro, AutorGröhn, Olli, AutorHarkin, Andrew, AutorHeerschap, Arend, AutorHelluy, Xavier, AutorHerfert, Kristina, AutorHeuser, Arnd, AutorHomberg, Judith R, AutorHouwing, Danielle J, AutorHyder, Fahmeed, AutorIelacqua, Giovanna Diletta, AutorJelescu, Ileana O, AutorJohansen-Berg, Heidi, AutorKaneko, Gen, AutorKawashima, Ryuta, AutorKeilholz, Shella D, AutorKeliris, Georgios A, AutorKelly, Clare, AutorKerskens, Christian, AutorKhokhar, Jibran Y, AutorKind, Peter C, AutorLanglois, Jean-Baptiste, AutorLerch, Jason P, AutorLópez-Hidalgo, Monica A, AutorManahan-Vaughan, Denise, AutorMarchand, Fabien, AutorMars, Rogier B, AutorMarsella, Gerardo, AutorMicotti, Edoardo, AutorMuñoz-Moreno, Emma, AutorNear, Jamie, AutorNiendorf, Thoralf, AutorOtte, Willem M, AutorPais, P1, Autor           Pan, Wen-Ju, AutorPrado-Alcalá, Roberto A, AutorQuirarte, Gina L, AutorRodger, Jennifer, AutorRosenow, Tim, AutorBaptista, Cassandra Sampaio, AutorSartorius, Alexander, AutorSawiak, Stephen J, AutorScheenen, Tom WJ, AutorShemesh, Noam, AutorShih, Yen-Yu Ian, AutorShmuel, Amir, AutorSoria, Guadalupe, AutorStoop, Ron, AutorThompson, Garth J, AutorTill, Sally M, AutorTodd, Nick, AutorVan Der Linden, Annemie, Autorvan der Toorn, Annette, Autorvan Tilborg, Geralda AF, AutorVanhove, Christian, AutorVeltien, Andor, AutorVerhoye, Marleen, AutorWachsmuth, Lydia, AutorWeber-Fahr, Wolfgang, AutorWenk, Patricia, AutorYu, X1, Autor           Zerbi, Valerio, AutorZhang, Nanyin, AutorZhang, Baogui B, AutorZimmer, Luc, AutorDevenyi, Gabriel A, AutorChakravarty, M Mallar, AutorHess, Andreas, Autor mehr..
Affiliations:
1Research Group Translational Neuroimaging and Neural Control, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_2528695              

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 Zusammenfassung: Task-free functional connectivity in animal models provides an experimental framework to examine connectivity phenomena under controlled conditions and allows comparison with invasive or terminal procedures. To date, animal acquisitions are performed with varying protocols and analyses that hamper result comparison and integration. We introduce StandardRat, a consensus rat functional MRI acquisition protocol tested across 20 centers. To develop this protocol with optimized acquisition and processing parameters, we initially aggregated 65 functional imaging datasets acquired in rats from 46 centers. We developed a reproducible pipeline for the analysis of rat data acquired with diverse protocols and determined experimental and processing parameters associated with a more robust functional connectivity detection. We show that the standardized protocol enhances biologically plausible functional connectivity patterns, relative to pre-existing acquisitions. The protocol and processing pipeline described here are openly shared with the neuroimaging community to promote interoperability and cooperation towards tackling the most important challenges in neuroscience.Competing Interest StatementAline Seuwen is an employee of Bruker, the manufacturer of preclinical MRI systems used for the acquisition of the majority of the datasets in this collection. Emmanuel L. Barbier is a consultant for Bruker. Benjamin Vidal is an employee of Theranexus company. Stefan Zurbruegg, Arno Doelemeyer, and Nicolau Beckmann are employees of Novartis Pharma AG. Thoralf Niendorf is founder and CEO of MRI.TOOLS GmbH.

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 Datum: 2022-04
 Publikationsstatus: Eingereicht
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 Identifikatoren: DOI: 10.1101/2022.04.27.489658
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Titel: bioRxiv
Genre der Quelle: Zeitschrift
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