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  StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain

Grandjean, J., Desrosiers-Gregoire, G., Anckaerts, C., Angeles-Valdez, D., Ayad, F., Barrière, D., Blockx, I., Bortel, A., Broadwater, M., Cardoso, B., Célestine, M., Chavez-Negrete, J., Choi, S., Christiaen, E., Clavijo, P., Colon-Perez, L., Cramer, S., Daniele, T., Dempsey, E., Diao, Y., Doelemeyer, A., Dopfel, D., Dvořáková, L., Falfán-Melgoza, C., Fernandes, F., Fowler, C., Fuentes-Ibañez, A., Garin, C., Gelderman, E., Golden, C. E., Guo, C. C., Henckens, M. J., Hennessy, L. A., Herman, P., Hofwijks, N., Horien, C., Ionescu, T. M., Jones, J., Kaesser, J., Kim, E., Lambers, H., Lazari, A., Lee, S.-H., Lillywhite, A., Liu, Y., Liu, Y. Y., López-Castro, A., López-Gil, X., Ma, Z., MacNicol, E., Madularu, D., Mandino, F., Marciano, S., McAuslan, M. J., McCunn, P., McIntosh, A., Meng, X., Meyer-Baese, L., Missault, S., Moro, F., Naessens, D., Nava-Gomez, L. J., Nonaka, H., Ortiz, J. J., Paasonen, J., Peeters, L. M., Pereira, M., Perez, P. D., Pompilus, M., Prior, M., Rakhmatullin, R., Reimann, H. M., Reinwald, J., de Rio, R. T., Rivera-Olvera, A., Ruiz-Pérez, D., Russo, G., Rutten, T. J., Ryoke, R., Sack, M., Salvan, P., Sanganahalli, B. G., Schroeter, A., Seewoo, B. J., Selingue, E., Seuwen, A., Shi, B., Sirmpilatze, N., Smith, J. A., Smith, C., Sobczak, F., Stenroos, P. J., Straathof, M., Strobelt, S., Sumiyoshi, A., Takahashi, K., Torres-Garcia, M., Tudela, R., van den Berg, M., van der Marel, K., van Hout, A. T., Vertullo, R., Vidal, B., Vrooman, R. M., Wang, V. X., Wank, I., Watson, D. J., Yin, T., Zhang, Y., Zurbruegg, S., Achard, S., Alcauter, S., Auer, D. P., Barbier, E. L., Baudewig, J., Beckmann, C. F., Beckmann, N., Becq, G. J., Blezer, E. L., Bolbos, R., Boretius, S., Bouvard, S., Budinger, E., Buxbaum, J. D., Cash, D., Chapman, V., Chuang, K.-H., Ciobanu, L., Coolen, B., Dalley, J. W., Dhenain, M., Dijkhuizen, R. M., Esteban, O., Faber, C., Febo, M., Feindel, K. W., Forloni, G., Fouquet, J., Garza-Villarreal, E. A., Gass, N., Glennon, J. C., Gozzi, A., Gröhn, O., Harkin, A., Heerschap, A., Helluy, X., Herfert, K., Heuser, A., Homberg, J. R., Houwing, D. J., Hyder, F., Ielacqua, G. D., Jelescu, I. O., Johansen-Berg, H., Kaneko, G., Kawashima, R., Keilholz, S. D., Keliris, G. A., Kelly, C., Kerskens, C., Khokhar, J. Y., Kind, P. C., Langlois, J.-B., Lerch, J. P., López-Hidalgo, M. A., Manahan-Vaughan, D., Marchand, F., Mars, R. B., Marsella, G., Micotti, E., Muñoz-Moreno, E., Near, J., Niendorf, T., Otte, W. M., Pais, P., Pan, W.-J., Prado-Alcalá, R. A., Quirarte, G. L., Rodger, J., Rosenow, T., Baptista, C. S., Sartorius, A., Sawiak, S. J., Scheenen, T. W., Shemesh, N., Shih, Y.-Y.-I., Shmuel, A., Soria, G., Stoop, R., Thompson, G. J., Till, S. M., Todd, N., Van Der Linden, A., van der Toorn, A., van Tilborg, G. A., Vanhove, C., Veltien, A., Verhoye, M., Wachsmuth, L., Weber-Fahr, W., Wenk, P., Yu, X., Zerbi, V., Zhang, N., Zhang, B. B., Zimmer, L., Devenyi, G. A., Chakravarty, M. M., & Hess, A. (submitted). StandardRat: A multi-center consensus protocol to enhance functional connectivity specificity in the rat brain.

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アイテムのパーマリンク: https://hdl.handle.net/21.11116/0000-000A-EC28-0 版のパーマリンク: https://hdl.handle.net/21.11116/0000-000A-EC2D-B
資料種別: 学術論文

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作成者

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 作成者:
Grandjean, J, 著者
Desrosiers-Gregoire, G, 著者
Anckaerts, C, 著者
Angeles-Valdez, D, 著者
Ayad, F, 著者
Barrière, DA, 著者
Blockx, I, 著者
Bortel, AB, 著者
Broadwater, M, 著者
Cardoso, BM, 著者
Célestine, M, 著者
Chavez-Negrete, JE, 著者
Choi, S1, 著者           
Christiaen, E, 著者
Clavijo, P, 著者
Colon-Perez, L, 著者
Cramer, S, 著者
Daniele, T, 著者
Dempsey, E, 著者
Diao, Y, 著者
Doelemeyer, A, 著者Dopfel, D, 著者 Dvořáková, L, 著者Falfán-Melgoza, C, 著者Fernandes, FF, 著者Fowler, CF, 著者Fuentes-Ibañez, A, 著者Garin, C, 著者Gelderman, E, 著者Golden, Carla EM, 著者Guo, Chao CG, 著者Henckens, Marloes JAG, 著者Hennessy, Lauren A, 著者Herman, Peter, 著者Hofwijks, Nita, 著者Horien, Corey, 著者Ionescu, Tudor M, 著者Jones, Jolyon, 著者Kaesser, Johannes, 著者Kim, Eugene, 著者Lambers, Henriette, 著者Lazari, Alberto, 著者Lee, Sung-Ho, 著者Lillywhite, Amanda, 著者Liu, Yikang, 著者Liu, Yanyan Y, 著者López-Castro, Alejandra, 著者López-Gil, Xavier, 著者Ma, Zilu, 著者MacNicol, Eilidh, 著者Madularu, Dan, 著者Mandino, Francesca, 著者Marciano, Sabina, 著者McAuslan, Matthew J, 著者McCunn, Patrick, 著者McIntosh, Alison, 著者Meng, Xianzong, 著者Meyer-Baese, Lisa, 著者Missault, Stephan, 著者Moro, Federico, 著者Naessens, Daphne, 著者Nava-Gomez, Laura J, 著者Nonaka, Hiroi, 著者Ortiz, Juan J, 著者Paasonen, Jaakko, 著者Peeters, Lore M, 著者Pereira, M, 著者Perez, Pablo D, 著者Pompilus, Marjory, 著者Prior, Malcolm, 著者Rakhmatullin, Rustam, 著者Reimann, Henning M, 著者Reinwald, Jonathan, 著者de Rio, Rodrigo Triana, 著者Rivera-Olvera, Alejandro, 著者Ruiz-Pérez, Daniel, 著者Russo, Gabriele, 著者Rutten, Tobias J, 著者Ryoke, Rie, 著者Sack, Markus, 著者Salvan, Piergiorgio, 著者Sanganahalli, Basavaraju G, 著者Schroeter, Aileen, 著者Seewoo, Bhedita J, 著者Selingue, Erwan, 著者Seuwen, Aline, 著者Shi, Bowen, 著者Sirmpilatze, Nikoloz, 著者Smith, Joanna AB, 著者Smith, Corrie, 著者Sobczak, F1, 著者           Stenroos, Petteri J, 著者Straathof, Milou, 著者Strobelt, Sandra, 著者Sumiyoshi, Akira, 著者Takahashi, K1, 著者           Torres-Garcia, ME, 著者Tudela, Raul, 著者van den Berg, Monica, 著者van der Marel, Kajo, 著者van Hout, Aran TB, 著者Vertullo, Roberta, 著者Vidal, Benjamin, 著者Vrooman, Roel M, 著者Wang, Victora X, 著者Wank, Isabel, 著者Watson, David JG, 著者Yin, Ting, 著者Zhang, Yongzhi, 著者Zurbruegg, Stefan, 著者Achard, Sophie, 著者Alcauter, Sarael, 著者Auer, Dorothee P, 著者Barbier, Emmanuel L, 著者Baudewig, J, 著者Beckmann, Christian F, 著者Beckmann, Nicolau, 著者Becq, Guillaume JPC, 著者Blezer, Erwin LA, 著者Bolbos, Radu, 著者Boretius, Susann, 著者Bouvard, Sandrine, 著者Budinger, Eike, 著者Buxbaum, Joseph D, 著者Cash, Diana, 著者Chapman, Victoria, 著者Chuang, Kai-Hsiang, 著者Ciobanu, Luisa, 著者Coolen, Bram, 著者Dalley, Jeffrey W, 著者Dhenain, Marc, 著者Dijkhuizen, Rick M, 著者Esteban, Oscar, 著者Faber, Cornelius, 著者Febo, Marcelo, 著者Feindel, Kirk W, 著者Forloni, Gianluigi, 著者Fouquet, Jérémie, 著者Garza-Villarreal, Eduardo A, 著者Gass, Natalia, 著者Glennon, Jeffrey C, 著者Gozzi, Alessandro, 著者Gröhn, Olli, 著者Harkin, Andrew, 著者Heerschap, Arend, 著者Helluy, Xavier, 著者Herfert, Kristina, 著者Heuser, Arnd, 著者Homberg, Judith R, 著者Houwing, Danielle J, 著者Hyder, Fahmeed, 著者Ielacqua, Giovanna Diletta, 著者Jelescu, Ileana O, 著者Johansen-Berg, Heidi, 著者Kaneko, Gen, 著者Kawashima, Ryuta, 著者Keilholz, Shella D, 著者Keliris, Georgios A, 著者Kelly, Clare, 著者Kerskens, Christian, 著者Khokhar, Jibran Y, 著者Kind, Peter C, 著者Langlois, Jean-Baptiste, 著者Lerch, Jason P, 著者López-Hidalgo, Monica A, 著者Manahan-Vaughan, Denise, 著者Marchand, Fabien, 著者Mars, Rogier B, 著者Marsella, Gerardo, 著者Micotti, Edoardo, 著者Muñoz-Moreno, Emma, 著者Near, Jamie, 著者Niendorf, Thoralf, 著者Otte, Willem M, 著者Pais, P1, 著者           Pan, Wen-Ju, 著者Prado-Alcalá, Roberto A, 著者Quirarte, Gina L, 著者Rodger, Jennifer, 著者Rosenow, Tim, 著者Baptista, Cassandra Sampaio, 著者Sartorius, Alexander, 著者Sawiak, Stephen J, 著者Scheenen, Tom WJ, 著者Shemesh, Noam, 著者Shih, Yen-Yu Ian, 著者Shmuel, Amir, 著者Soria, Guadalupe, 著者Stoop, Ron, 著者Thompson, Garth J, 著者Till, Sally M, 著者Todd, Nick, 著者Van Der Linden, Annemie, 著者van der Toorn, Annette, 著者van Tilborg, Geralda AF, 著者Vanhove, Christian, 著者Veltien, Andor, 著者Verhoye, Marleen, 著者Wachsmuth, Lydia, 著者Weber-Fahr, Wolfgang, 著者Wenk, Patricia, 著者Yu, X1, 著者           Zerbi, Valerio, 著者Zhang, Nanyin, 著者Zhang, Baogui B, 著者Zimmer, Luc, 著者Devenyi, Gabriel A, 著者Chakravarty, M Mallar, 著者Hess, Andreas, 著者 全て表示
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1Research Group Translational Neuroimaging and Neural Control, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_2528695              

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 要旨: Task-free functional connectivity in animal models provides an experimental framework to examine connectivity phenomena under controlled conditions and allows comparison with invasive or terminal procedures. To date, animal acquisitions are performed with varying protocols and analyses that hamper result comparison and integration. We introduce StandardRat, a consensus rat functional MRI acquisition protocol tested across 20 centers. To develop this protocol with optimized acquisition and processing parameters, we initially aggregated 65 functional imaging datasets acquired in rats from 46 centers. We developed a reproducible pipeline for the analysis of rat data acquired with diverse protocols and determined experimental and processing parameters associated with a more robust functional connectivity detection. We show that the standardized protocol enhances biologically plausible functional connectivity patterns, relative to pre-existing acquisitions. The protocol and processing pipeline described here are openly shared with the neuroimaging community to promote interoperability and cooperation towards tackling the most important challenges in neuroscience.Competing Interest StatementAline Seuwen is an employee of Bruker, the manufacturer of preclinical MRI systems used for the acquisition of the majority of the datasets in this collection. Emmanuel L. Barbier is a consultant for Bruker. Benjamin Vidal is an employee of Theranexus company. Stefan Zurbruegg, Arno Doelemeyer, and Nicolau Beckmann are employees of Novartis Pharma AG. Thoralf Niendorf is founder and CEO of MRI.TOOLS GmbH.

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 日付: 2022-04
 出版の状態: 投稿済み
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 識別子(DOI, ISBNなど): DOI: 10.1101/2022.04.27.489658
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出版物名: bioRxiv
種別: 学術雑誌
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