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  SHOREmap: simultaneous mapping and mutation identification by deep sequencing

Schneeberger, K., Ossowski, S., Lanz, C., Juul, T., Petersen, A., Nielsen, K., et al. (2009). SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods, 6(8), 550-551. doi:10.1038/nmeth0809-550.

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 Creators:
Schneeberger, K1, Author           
Ossowski, S1, Author           
Lanz, C1, Author           
Juul, T, Author
Petersen, AH, Author
Nielsen, KL, Author
Jørgensen, J-E, Author
Weigel, D1, Author                 
Andersen, SU, Author           
Affiliations:
1Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society, ou_3375790              

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 Abstract: To the Editor: Traditional strategies for identification of causal mutations involve two discrete steps: recombinant genotyping and candidate gene sequencing. To dramatically speed up identification of causative point mutations and small deletions, we provide the software package SHOREmap (http://1001genomes.org/downloads/shore.html), an extension of the short read analysis pipeline SHORE1. SHOREmap supports genome-wide genotyping and candidate-gene sequencing in a single step through analysis of deep sequencing data from a large pool of recombinants, as recently proposed2.

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 Dates: 2009-08
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1038/nmeth0809-550
PMID: 19644454
 Degree: -

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Title: Nature Methods
  Other : Nature Methods
Source Genre: Journal
 Creator(s):
Affiliations:
Publ. Info: New York, NY : Nature Publishing Group
Pages: - Volume / Issue: 6 (8) Sequence Number: - Start / End Page: 550 - 551 Identifier: ISSN: 1548-7091
CoNE: https://pure.mpg.de/cone/journals/resource/111088195279556