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  Accurate NMR Structures Through Minimization of an Extended Hybrid Energy

Nilges, M., Bernard, A., Bardiaux, B., Malliavin, T., Habeck, M., & Rieping, W. (2008). Accurate NMR Structures Through Minimization of an Extended Hybrid Energy. Structure, 16(9), 1305-1312. doi:10.1016/j.str.2008.07.008.

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Nilges, M, Autor
Bernard, A, Autor
Bardiaux, B, Autor
Malliavin, T, Autor
Habeck, M1, Autor                 
Rieping, W, Autor
Affiliations:
1Department Protein Evolution, Max Planck Institute for Developmental Biology, Max Planck Society, ou_3375791              

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 Zusammenfassung: The use of generous distance bounds has been the hallmark of NMR structure determination. However, bounds necessitate the estimation of data quality before the calculation, reduce the information content, introduce human bias, and allow for major errors in the structures. Here, we propose a new rapid structure calculation scheme based on Bayesian analysis. The minimization of an extended energy function, including a new type of distance restraint and a term depending on the data quality, results in an estimation of the data quality in addition to coordinates. This allows for the determination of the optimal weight on the experimental information. The resulting structures are of better quality and closer to the X–ray crystal structure of the same molecule. With the new calculation approach, the analysis of discrepancies from the target distances becomes meaningful. The strategy may be useful in other applications—for example, in homology modeling.

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 Datum: 2008-09
 Publikationsstatus: Erschienen
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 Ort, Verlag, Ausgabe: -
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 Identifikatoren: DOI: 10.1016/j.str.2008.07.008
PMID: 18786394
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Titel: Structure
  Andere : Structure
Genre der Quelle: Zeitschrift
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Affiliations:
Ort, Verlag, Ausgabe: London : Cell Press
Seiten: - Band / Heft: 16 (9) Artikelnummer: - Start- / Endseite: 1305 - 1312 Identifikator: ISSN: 0969-2126
CoNE: https://pure.mpg.de/cone/journals/resource/954927002244_1