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  Blind spots on western blots: Assessment of common problems in western blot figures and methods reporting with recommendations to improve them

Kroon, C., Breuer, L., Jones, L., An, J., Akan, A., Mohamed Ali, E. A., Busch, F., Fislage, M., Ghosh, B., Hellrigel-Holderbaum, M., Kazezian, V., Koppold, A., Moreira Restrepo, C. A., Riedel, N., Scherschinski, L., Urrutia Gonzalez, F. R., & Weissgerber, T. L. (2022). Blind spots on western blots: Assessment of common problems in western blot figures and methods reporting with recommendations to improve them. PLoS Biology, 20(9):. doi:10.1371/journal.pbio.3001783.

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アイテムのパーマリンク: https://hdl.handle.net/21.11116/0000-000B-39C0-C 版のパーマリンク: https://hdl.handle.net/21.11116/0000-000E-0C26-B
資料種別: 学術論文

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Kroon_2022.pdf (出版社版), 4MB
ファイルのパーマリンク:
https://hdl.handle.net/21.11116/0000-000B-39C2-A
ファイル名:
Kroon_2022.pdf
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-
OA-Status:
Gold
閲覧制限:
公開
MIMEタイプ / チェックサム:
application/pdf / [MD5]
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著作権日付:
-
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-

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作成者

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 作成者:
Kroon, Cristina1, 著者
Breuer, Larissa2, 3, 著者
Jones, Lydia4, 著者
An, Jeehye5, 6, 著者
Akan, Ayça5, 7, 著者           
Mohamed Ali, Elkhansa Ahmed8, 著者
Busch, Felix9, 10, 著者
Fislage, Marinus10, 著者
Ghosh, Biswajit3, 11, 著者
Hellrigel-Holderbaum, Max5, 12, 著者
Kazezian, Vartan13, 14, 著者
Koppold, Alina15, 著者
Moreira Restrepo, Cesar Alberto4, 著者
Riedel, Nico13, 著者
Scherschinski, Lea16, 著者
Urrutia Gonzalez, Fernando Raúl4, 17, 18, 著者
Weissgerber, Tracey L.13, 著者
所属:
1Institute of Biochemistry, Charité University Medicine Berlin, Germany, ou_persistent22              
2German Center for Neurodegenerative Diseases, Berlin, Germany, ou_persistent22              
3Department of Biology, Chemistry, Pharmacy, FU Berlin, Germany, ou_persistent22              
4Berlin School of Public Health, Charité University Medicine Berlin, Germany, ou_persistent22              
5Berlin School of Mind and Brain, Humboldt University Berlin, Germany, ou_persistent22              
6Department of Experimental Neurology, Charité University Medicine Berlin, Germany, ou_persistent22              
7Department Neurology, MPI for Human Cognitive and Brain Sciences, Max Planck Society, ou_634549              
8Department of Psychiatry and Neurosciences, Charité University Medicine Berlin, Germany, ou_persistent22              
9Department of Radiology, Charité University Medicine Berlin, Germany, ou_persistent22              
10Department of Anesthesiology and Operative Intensive Care, Charité University Medicine Berlin, Germany, ou_persistent22              
11Max Planck Institute for Molecular Genetics, Berlin, Germany, ou_persistent22              
12Interdisciplinary Center of Sleep Medicine, Charité University Medicine Berlin, Germany, ou_persistent22              
13QUEST Center for Responsible Research, Berlin Institute of Health (BIH), Charité University Medicine Berlin, Germany, ou_persistent22              
14Department of Biochemistry, FU Berlin, Germany, ou_persistent22              
15Department of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Germany, ou_persistent22              
16Department of Neurosurgery, Charité University Medicine Berlin, Germany, ou_persistent22              
17Institute of Public Health, Charité University Medicine Berlin, Germany, ou_persistent22              
18Center for Stroke Research, Charité University Medicine Berlin, Germany, ou_persistent22              

内容説明

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 要旨: Western blotting is a standard laboratory method used to detect proteins and assess their expression levels. Unfortunately, poor western blot image display practices and a lack of detailed methods reporting can limit a reader's ability to evaluate or reproduce western blot results. While several groups have studied the prevalence of image manipulation or provided recommendations for improving western blotting, data on the prevalence of common publication practices are scarce. We systematically examined 551 articles published in the top 25% of journals in neurosciences (n = 151) and cell biology (n = 400) that contained western blot images, focusing on practices that may omit important information. Our data show that most published western blots are cropped and blot source data are not made available to readers in the supplement. Publishing blots with visible molecular weight markers is rare, and many blots additionally lack molecular weight labels. Western blot methods sections often lack information on the amount of protein loaded on the gel, blocking steps, and antibody labeling protocol. Important antibody identifiers like company or supplier, catalog number, or RRID were omitted frequently for primary antibodies and regularly for secondary antibodies. We present detailed descriptions and visual examples to help scientists, peer reviewers, and editors to publish more informative western blot figures and methods. Additional resources include a toolbox to help scientists produce more reproducible western blot data, teaching slides in English and Spanish, and an antibody reporting template.

資料詳細

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言語: eng - English
 日付: 2022-06-072022-08-042022-09-12
 出版の状態: オンラインで出版済み
 ページ: -
 出版情報: -
 目次: -
 査読: -
 識別子(DOI, ISBNなど): DOI: 10.1371/journal.pbio.3001783
その他: eCollection 2022
PMID: 36095010
PMC: PMC9518894
 学位: -

関連イベント

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訴訟

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Project information

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Project name : -
Grant ID : 301_TrainIndik
Funding program : -
Funding organization : Berlin University Alliance

出版物 1

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出版物名: PLoS Biology
  その他 : PLoS Biol.
種別: 学術雑誌
 著者・編者:
所属:
出版社, 出版地: San Francisco, California, US : Public Library of Science
ページ: - 巻号: 20 (9) 通巻号: e3001783 開始・終了ページ: - 識別子(ISBN, ISSN, DOIなど): ISSN: 1544-9173
CoNE: https://pure.mpg.de/cone/journals/resource/111056649444170