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  In situ small-angle X-ray scattering reveals strong condensation of DNA origami during silicification

Ober, M. F., Baptist, A., Wassermann, L., Heuer-Jungemann, A., & Nickel, B. (2022). In situ small-angle X-ray scattering reveals strong condensation of DNA origami during silicification. Nature Communications, 13(1): 5668. doi:10.1038/s41467-022-33083-5.

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Ober, Martina F.1, Autor
Baptist, Anna1, Autor
Wassermann, Lea1, Autor
Heuer-Jungemann, Amelie2, Autor           
Nickel, Bert1, Autor
Affiliations:
1external, ou_persistent22              
2Amelie Heuer-Jungemann / DNA Hybridnanomaterials, Max Planck Institute of Biochemistry, Max Planck Society, ou_3323947              

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Schlagwörter: GROWTH-MECHANISM; SILICA; NANOSTRUCTURES; NANOPARTICLES; ENCAPSULATIONScience & Technology - Other Topics;
 Zusammenfassung: DNA origami can be coated in a layer of silica to improve chemical and thermal stability however; it is unclear if this is a surface or interpenetrating layer. Here, the authors use in situ small-angle X-ray scattering to study silica deposition and observe internal silica formation resulting in DNA origami condensation and structure shrinkage.
Silicification of DNA origami structures increases their stability and provides chemical protection. Yet, it is unclear whether the whole DNA framework is embedded or if silica just forms an outer shell and how silicification affects the origami's internal structure. Employing in situ small-angle X-ray scattering (SAXS), we show that addition of silica precursors induces substantial condensation of the DNA origami at early reaction times by almost 10 %. Subsequently, the overall size of the silicified DNA origami increases again due to increasing silica deposition. We further identify the SAXS Porod invariant as a reliable, model-free parameter for the evaluation of the amount of silica formation at a given time. Contrast matching of the DNA double helix Lorentzian peak reveals silica growth also inside the origami. The less polar silica forming within the origami structure, replacing more than 40 % of the internal hydration water, causes a hydrophobic effect: condensation. DNA origami objects with flat surfaces show a strong tendency towards aggregation during silicification, presumably driven by the same entropic forces causing condensation. Maximally condensed origami displayed thermal stability up to 60 degrees C. Our studies provide insights into the silicification reaction allowing for the formulation of optimized reaction protocols.

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Sprache(n): eng - English
 Datum: 2022-09-27
 Publikationsstatus: Online veröffentlicht
 Seiten: 7
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: ISI: 000860852300017
DOI: 10.1038/s41467-022-33083-5
 Art des Abschluß: -

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Titel: Nature Communications
  Kurztitel : Nat. Commun.
Genre der Quelle: Zeitschrift
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Affiliations:
Ort, Verlag, Ausgabe: London : Nature Publishing Group
Seiten: - Band / Heft: 13 (1) Artikelnummer: 5668 Start- / Endseite: - Identifikator: ISSN: 2041-1723
CoNE: https://pure.mpg.de/cone/journals/resource/2041-1723