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  Identification of C. elegans DAF-12-binding sites, response elements, and target genes

Shostak, Y., Van Gilst, M. R., Antebi, A., & Yamamoto, K. R. (2004). Identification of C. elegans DAF-12-binding sites, response elements, and target genes. Genes Dev, 18(20), 2529-44. doi:10.1101/gad.1218504.

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https://www.ncbi.nlm.nih.gov/pubmed/15489294 (beliebiger Volltext)
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 Urheber:
Shostak, Y., Autor
Van Gilst, M. R., Autor
Antebi, A.1, Autor           
Yamamoto, K. R., Autor
Affiliations:
1Department Antebi - Molecular Genetics of Ageing, Max Planck Institute for Biology of Ageing, Max Planck Society, ou_1942285              

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Schlagwörter: Animals Base Sequence Binding Sites/physiology Caenorhabditis elegans Caenorhabditis elegans Proteins/*genetics/*metabolism/physiology Fluorescence Polarization *Gene Expression Regulation Genes, Regulator/genetics/*physiology Genes, Reporter/genetics Green Fluorescent Proteins Molecular Sequence Data Oligonucleotides Receptors, Cytoplasmic and Nuclear/*genetics/*metabolism/physiology Response Elements/*genetics Reverse Transcriptase Polymerase Chain Reaction Saccharomyces cerevisiae Sequence Analysis, DNA Signal Transduction/physiology
 Zusammenfassung: Intracellular receptor DAF-12 regulates dauer formation and developmental age and affects Caenorhabditis elegans lifespan. Genetic analyses place DAF-12 at the convergence of several signal transduction pathways; however, the downstream effectors and the molecular basis for the receptor's multiple physiological outputs are unknown. Beginning with C. elegans genomic DNA, we devised a procedure for multiple rounds of selection and amplification that yielded fragments bearing DAF-12-binding sites. These genomic fragments mediated DAF-12-dependent transcriptional regulation both in Saccharomyces cerevisiae and in C. elegans; that is, they served as functional DAF-12 response elements. We determined that most of the genomic fragments that displayed DAF-12 response element activity in yeast were linked to genes that were regulated by DAF-12 in C. elegans; indeed, the response element-containing fragments typically resided within clusters of DAF-12-regulated genes. DAF-12 target gene regulation was developmental program and stage specific, potentially predicting a fit of these targets into regulatory networks governing aspects of C. elegans reproductive development and dauer formation.

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 Datum: 2004-10-152004-10-19
 Publikationsstatus: Erschienen
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 Identifikatoren: Anderer: 15489294
DOI: 10.1101/gad.1218504
ISSN: 0890-9369 (Print)0890-9369
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Titel: Genes Dev
  Alternativer Titel : Genes & development
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 18 (20) Artikelnummer: - Start- / Endseite: 2529 - 44 Identifikator: -