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  Anatomical labeling of intracranial arteries with deep learning in patients with cerebrovascular disease

Hilbert, A., Rieger, J., Madai, V. I., Akay, E. M., Aydin, O. U., Behland, J., et al. (2022). Anatomical labeling of intracranial arteries with deep learning in patients with cerebrovascular disease. Frontiers in Neurology, 13: 1000914. doi:10.3389/fneur.2022.1000914.

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Hilbert_Rieger_2022.pdf (Verlagsversion), 3MB
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 Urheber:
Hilbert, Adam1, Autor
Rieger, Jana1, Autor
Madai, Vince I.1, 2, 3, Autor
Akay, Ela M.1, Autor
Aydin, Orhun U.1, Autor
Behland, Jonas1, Autor
Khalil, Ahmed4, 5, 6, 7, Autor           
Galinovic, Ivana4, Autor
Sobesky, Jan4, 8, Autor
Fiebach, Jochen4, Autor
Livne, Michelle1, Autor
Frey, Dietmar1, Autor
Affiliations:
1Charité Lab for Artificial Intelligence in Medicine (CLAIM), Charité University Medicine Berlin, Germany, ou_persistent22              
2QUEST Center for Transforming Biomedical Research, Berlin Institute of Health (BIH), Germany, ou_persistent22              
3School of Computing and Digital Technology, Faculty of Computing, Engineering and the Built Environment, University of Birmingham, United Kingdom, ou_persistent22              
4Center for Stroke Research, Charité University Medicine Berlin, Germany, ou_persistent22              
5Department Neurology, MPI for Human Cognitive and Brain Sciences, Max Planck Society, ou_634549              
6MindBrainBody Institute, Berlin School of Mind and Brain, Humboldt University Berlin, Germany, ou_persistent22              
7Biomedical Innovation Academy, Berlin Institute of Health (BIH), Germany, ou_persistent22              
8Department of Neurology, Johanna-Etienne-Hospital, Neuss, Germany, ou_persistent22              

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Schlagwörter: UNET; Anatomical labeling; Cerebrovascular; Deep learning; Intracranial arteries; Stroke
 Zusammenfassung: Brain arteries are routinely imaged in the clinical setting by various modalities, e.g., time-of-flight magnetic resonance angiography (TOF-MRA). These imaging techniques have great potential for the diagnosis of cerebrovascular disease, disease progression, and response to treatment. Currently, however, only qualitative assessment is implemented in clinical applications, relying on visual inspection. While manual or semi-automated approaches for quantification exist, such solutions are impractical in the clinical setting as they are time-consuming, involve too many processing steps, and/or neglect image intensity information. In this study, we present a deep learning-based solution for the anatomical labeling of intracranial arteries that utilizes complete information from 3D TOF-MRA images. We adapted and trained a state-of-the-art multi-scale Unet architecture using imaging data of 242 patients with cerebrovascular disease to distinguish 24 arterial segments. The proposed model utilizes vessel-specific information as well as raw image intensity information, and can thus take tissue characteristics into account. Our method yielded a performance of 0.89 macro F1 and 0.90 balanced class accuracy (bAcc) in labeling aggregated segments and 0.80 macro F1 and 0.83 bAcc in labeling detailed arterial segments on average. In particular, a higher F1 score than 0.75 for most arteries of clinical interest for cerebrovascular disease was achieved, with higher than 0.90 F1 scores in the larger, main arteries. Due to minimal pre-processing, simple usability, and fast predictions, our method could be highly applicable in the clinical setting.

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Sprache(n): eng - English
 Datum: 2022-07-222022-09-222022-10-17
 Publikationsstatus: Online veröffentlicht
 Seiten: -
 Ort, Verlag, Ausgabe: -
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 Art der Begutachtung: -
 Identifikatoren: DOI: 10.3389/fneur.2022.1000914
Anderer: eCollection 2022
PMID: 36341105
PMC: PMC9634733
 Art des Abschluß: -

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Projektname : -
Grant ID : 031B0154
Förderprogramm : -
Förderorganisation : German Federal Ministry of Education and Research (BMBF)
Projektname : -
Grant ID : 777107
Förderprogramm : Horizon 2020
Förderorganisation : European Commission (EC)

Quelle 1

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Titel: Frontiers in Neurology
Genre der Quelle: Zeitschrift
 Urheber:
Affiliations:
Ort, Verlag, Ausgabe: Lausanne, Switzerland : Frontiers Research Foundation
Seiten: - Band / Heft: 13 Artikelnummer: 1000914 Start- / Endseite: - Identifikator: ISSN: 1664-2295
CoNE: https://pure.mpg.de/cone/journals/resource/1664-2295