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  End-to-end neural system identification with neural information flow

Seeliger, K., Ambrogioni, L., Güçlütürk, Y., van den Bulk, L. M., Güçlü, U., & van Gerven, M. A. J. (2021). End-to-end neural system identification with neural information flow. PLoS Computational Biology, 17(2): e1008558. doi:10.1371/journal.pcbi.1008558.

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 Creators:
Seeliger, Katja1, 2, Author           
Ambrogioni, L.1, Author
Güçlütürk, Y.1, Author
van den Bulk, L. M.1, Author
Güçlü, U.1, Author
van Gerven, M. A. J.1, Author
Affiliations:
1Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands, ou_persistent22              
2Max Planck Research Group Vision and Computational Cognition, MPI for Human Cognitive and Brain Sciences, Max Planck Society, ou_3158378              

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 Abstract: Neural information flow (NIF) provides a novel approach for system identification in neuroscience. It models the neural computations in multiple brain regions and can be trained end-to-end via stochastic gradient descent from noninvasive data. NIF models represent neural information processing via a network of coupled tensors, each encoding the representation of the sensory input contained in a brain region. The elements of these tensors can be interpreted as cortical columns whose activity encodes the presence of a specific feature in a spatiotemporal location. Each tensor is coupled to the measured data specific to a brain region via low-rank observation models that can be decomposed into the spatial, temporal and feature receptive fields of a localized neuronal population. Both these observation models and the convolutional weights defining the information processing within regions are learned end-to-end by predicting the neural signal during sensory stimulation. We trained a NIF model on the activity of early visual areas using a large-scale fMRI dataset recorded in a single participant. We show that we can recover plausible visual representations and population receptive fields that are consistent with empirical findings.

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Language(s): eng - English
 Dates: 2019-10-112020-11-242021-02-04
 Publication Status: Published online
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1371/journal.pcbi.1008558
PMID: 33539366
PMC: PMC7888598
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Project name : -
Grant ID : 639.072.513
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Funding organization : Netherlands Organization for Scientific Research (NWO)

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Title: PLoS Computational Biology
Source Genre: Journal
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Publ. Info: San Francisco, CA : Public Library of Science
Pages: - Volume / Issue: 17 (2) Sequence Number: e1008558 Start / End Page: - Identifier: ISSN: 1553-734X
CoNE: https://pure.mpg.de/cone/journals/resource/1000000000017180_1