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  Synthesis of novel glutarimide ligands for the E3 ligase substrate receptor Cereblon (CRBN): Investigation of their binding mode and antiproliferative effects against myeloma cell lines

Krasavin, M., Adamchik, M., Bubyrev, A., Heim, C., Maiwald, S., Zhukovsky, D., et al. (2022). Synthesis of novel glutarimide ligands for the E3 ligase substrate receptor Cereblon (CRBN): Investigation of their binding mode and antiproliferative effects against myeloma cell lines. European Journal of Medicinal Chemistry, 246: 114990. doi:10.1016/j.ejmech.2022.114990.

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Krasavin, M, Author
Adamchik, M, Author
Bubyrev, A, Author
Heim, C1, 2, Author                 
Maiwald, S1, 2, Author                 
Zhukovsky, D, Author
Zhmurov, P, Author
Bunev, A, Author
Hartmann, MD1, 2, Author                 
Affiliations:
1Molecular Recognition and Catalysis Group, Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3477391              
2Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, Max-Planck-Ring 5, 72076 Tübingen, DE, ou_3371683              

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 Abstract: To expand the chemical toolkit for targeted protein degradation, we report the generation of a new series of non-thalidomide Cereblon (CRBN) ligands. Readily available 2-methylidene glutarimide was converted to a series of 2-((hetero)aryl(methyl))thio glutarimides via the thio-Michael addition reaction. The compounds thus synthesized were evaluated for their affinity to the thalidomide-binding domain of human CRBN and their binding modes studied via X-ray crystallography. This helped identify several promising glutarimide derivatives which bind stronger to CRBN compared to thalidomide and contain a functional group which permits further chemical conjugation. Oxidation of the sulfur atom in a select group of 2-((hetero)aryl(methyl))thio glutarimides produced the respective sulfones which were found to possess a markedly stronger antiproliferative profile against multiple myeloma cell lines and a sophisticated structural binding mode with additional hydrogen bonding interactions. The newly identified Cereblon ligands form the basis for the synthesis of novel PROTAC protein degraders.

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 Dates: 2022-12
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: DOI: 10.1016/j.ejmech.2022.114990
PMID: 36476642
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Title: European Journal of Medicinal Chemistry
Source Genre: Journal
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Publ. Info: Elsevier
Pages: 12 Volume / Issue: 246 Sequence Number: 114990 Start / End Page: - Identifier: ISSN: 0223-5234
CoNE: https://pure.mpg.de/cone/journals/resource/0223-5234