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  Accelerated and quantitative three-dimensional molecular MRI using a generative adversarial network

Weigand-Whittier, J., Sedykh, M., Herz, K., Coll-Font, J., Foster, A., Gerstner, E., et al. (2023). Accelerated and quantitative three-dimensional molecular MRI using a generative adversarial network. Magnetic Resonance in Medicine, 89(5), 1901-1914. doi:10.1002/mrm.29574.

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Weigand-Whittier, J, Author
Sedykh, M, Author
Herz, K1, Author                 
Coll-Font, J, Author
Foster, AN, Author
Gerstner, ER, Author
Nguyen, C, Author
Zaiss, M1, Author                 
Farrar, CT, Author
Perlman, O, Author
Affiliations:
1Department High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Max Planck Society, ou_1497796              

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 Abstract: Purpose: To substantially shorten the acquisition time required for quantitative three-dimensional (3D) chemical exchange saturation transfer (CEST) and semisolid magnetization transfer (MT) imaging and allow for rapid chemical exchange parameter map reconstruction.
Methods: Three-dimensional CEST and MT magnetic resonance fingerprinting (MRF) datasets of L-arginine phantoms, whole-brains, and calf muscles from healthy volunteers, cancer patients, and cardiac patients were acquired using 3T clinical scanners at three different sites, using three different scanner models and coils. A saturation transfer-oriented generative adversarial network (GAN-ST) supervised framework was then designed and trained to learn the mapping from a reduced input data space to the quantitative exchange parameter space, while preserving perceptual and quantitative content.
Results: The GAN-ST 3D acquisition time was 42-52 s, 70% shorter than CEST-MRF. The quantitative reconstruction of the entire brain took 0.8 s. An excellent agreement was observed between the ground truth and GAN-based L-arginine concentration and pH values (Pearson's r > 0.95, ICC > 0.88, NRMSE < 3%). GAN-ST images from a brain-tumor subject yielded a semi-solid volume fraction and exchange rate NRMSE of 3.8±1.3%
and 4.6±1.3% , respectively, and SSIM of 96.3±1.6% and 95.0±2.4%
, respectively. The mapping of the calf-muscle exchange parameters in a cardiac patient, yielded NRMSE < 7% and SSIM > 94% for the semi-solid exchange parameters. In regions with large susceptibility artifacts, GAN-ST has demonstrated improved performance and reduced noise compared to MRF.
Conclusion: GAN-ST can substantially reduce the acquisition time for quantitative semi-solid MT/CEST mapping, while retaining performance even when facing pathologies and scanner models that were not available during training.

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 Dates: 2022-122023-05
 Publication Status: Issued
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 Table of Contents: -
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 Identifiers: DOI: 10.1002/mrm.29574
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Title: Magnetic Resonance in Medicine
Source Genre: Journal
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Publ. Info: New York : Wiley-Liss
Pages: - Volume / Issue: 89 (5) Sequence Number: - Start / End Page: 1901 - 1914 Identifier: ISSN: 0740-3194
CoNE: https://pure.mpg.de/cone/journals/resource/954925538149