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キーワード:
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要旨:
Arabidopsis thaliana is a not only an important model species for laboratory research, but also for the study of natural intraspecific genetic variation. Through the 1001 Genomes project, we have catalogued genetic variation in 1135 high-quality re-sequenced natural inbred lines representing the global population in its native Eurasian and North African range, and in recently colonized North America. Our data include over 10 million single nucleotide polymorphisms and 1.5 million small insertion-deletion polymorphisms (about one every 10 bp on average), which makes it the densest variant collection for any organism. To make this important resource of genomic variation more accessible and useful for the community, we have developed a suite of web-based interfaces for querying and analyzing the data. Users can subset the full genome variant call format or pseudogenome files by strain or locus, or find the most closely related strain in the 1001 genomes for a strain of interest. In this talk, I will demonstrate these and other tools in the development pipeline and discuss how they will be integrated into the Arabidopsis Information Portal.
