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  Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence

Rieck, B., Yates, T., Bock, C., Borgwardt, K., Wolf, G., Turk-Browne, N., & Krishnaswamy, S. (2020). Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence. Advances in Neural Information Processing Systems (NeurIPS 2020), 33, 6900-6912. doi:10.48550/arXiv.2006.07882.

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アイテムのパーマリンク: https://hdl.handle.net/21.11116/0000-000C-F09E-3 版のパーマリンク: https://hdl.handle.net/21.11116/0000-000D-D592-D
資料種別: 学術論文

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URL:
https://arxiv.org/pdf/2006.07882.pdf (全文テキスト(全般))
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arXiv
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URL:
https://github.com/BorgwardtLab/fMRI_Cubical_Persistence (全文テキスト(全般))
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GitHub
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https://www.youtube.com/watch?v=4mBcwy1tOJ4 (全文テキスト(全般))
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作成者

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 作成者:
Rieck, Bastian, 著者
Yates, Tristan, 著者
Bock, Christian, 著者
Borgwardt, Karsten1, 著者                 
Wolf, Guy, 著者
Turk-Browne, Nicholas, 著者
Krishnaswamy, Smita, 著者
所属:
1ETH Zürich, ou_persistent22              

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 要旨: Functional magnetic resonance imaging (fMRI) is a crucial technology for gaining insights into cognitive processes in humans. Data amassed from fMRI measurements result in volumetric data sets that vary over time. However, analysing such data presents a challenge due to the large degree of noise and person-to-person variation in how information is represented in the brain. To address this challenge, we present a novel topological approach that encodes each time point in an fMRI data set as a persistence diagram of topological features, i.e. high-dimensional voids present in the data. This representation naturally does not rely on voxel-by-voxel correspondence and is robust towards noise. We show that these time-varying persistence diagrams can be clustered to find meaningful groupings between participants, and that they are also useful in studying within-subject brain state trajectories of subjects performing a particular task. Here, we apply both clustering and trajectory analysis techniques to a group of participants watching the movie 'Partly Cloudy'. We observe significant differences in both brain state trajectories and overall topological activity between adults and children watching the same movie.

資料詳細

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 日付: 20202020
 出版の状態: 出版
 ページ: 6900-6912
 出版情報: -
 目次: -
 査読: -
 識別子(DOI, ISBNなど): DOI: 10.48550/arXiv.2006.07882
 学位: -

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出版物 1

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出版物名: Advances in Neural Information Processing Systems (NeurIPS 2020)
種別: 学術雑誌
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出版社, 出版地: -
ページ: - 巻号: 33 通巻号: - 開始・終了ページ: 6900 - 6912 識別子(ISBN, ISSN, DOIなど): -