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  The Rhodoexplorer platform for red algal genomics and whole genome assemblies for several Gracilaria species

Lipinska, A., Krueger-Hadfield, S., Godfroy, O., Dittami, S., Ayres-Ostrock, L., Bonthond, E., et al. (2023). The Rhodoexplorer platform for red algal genomics and whole genome assemblies for several Gracilaria species. Genome Biology and Evolution, 17(7): evad124. doi:10.1093/gbe/evad124.

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Lipinska, AP1, 2, Autor           
Krueger-Hadfield, SA, Autor
Godfroy, O, Autor
Dittami, S, Autor
Ayres-Ostrock, L, Autor
Bonthond, E, Autor
Brillet-Guéguen, L, Autor
Coelho, S2, Autor                 
Corre, E, Autor
Cossard, G2, Autor                 
Destombe, C, Autor
Epperlein, P2, Autor           
Faugeron, S, Autor
Ficko-Blean, E, Autor
Beltrán, J, Autor
Lavaut, E, Autor
Le Bars, A, Autor
Marchi, F, Autor
Mauger, S, Autor
Michel, G, Autor
Potin, P, AutorScornet, D, AutorSotka, EE, AutorWeinberger, F, AutorCabral de Oliveira, M, AutorGuillemin, M-L, AutorPlastino, EM, AutorValero, M, Autor mehr..
Affiliations:
1Reproductive Isolation and Speciation in Brown Algae Group, Department Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3487208              
2Department Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3371686              

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 Zusammenfassung: Macroalgal (seaweed) genomic resources are generally lacking as compared to other eukaryotic taxa, and this is particularly true in the red algae (Rhodophyta). Understanding red algal genomes is critical to understanding eukaryotic evolution given that red algal genes are spread across eukaryotic lineages from secondary endosymbiosis and red algae diverged early in the Archaeplastids. The Gracilariales is a highly diverse and widely distributed order including species that can serve as ecosystem engineers in intertidal habitats and several notorious introduced species. The genus Gracilaria is cultivated worldwide, in part for its production of agar and other bioactive compounds with downstream pharmaceutical and industrial applications. This genus is also emerging as a model for algal evolutionary ecology. Here, we report new whole genome assemblies for two species (G. chilensis and G. gracilis), a draft genome assembly of G. caudata, and genome annotation of the previously published G. vermiculophylla genome. To facilitate accessibility and comparative analysis, we integrated these data in a newly created web-based portal dedicated to red algal genomics (https://rhodoexplorer.sb-roscoff.fr). These genomes will provide a resource for understanding algal biology and, more broadly, eukaryotic evolution.

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 Datum: 2023-07
 Publikationsstatus: Erschienen
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 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: -
 Identifikatoren: DOI: 10.1093/gbe/evad124
PMID: 37481260
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Titel: Genome Biology and Evolution
  Andere : GBE
  Kurztitel : Genome Biol Evol
Genre der Quelle: Zeitschrift
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Affiliations:
Ort, Verlag, Ausgabe: Oxford : Oxford Univ. Press
Seiten: 8 Band / Heft: 17 (7) Artikelnummer: evad124 Start- / Endseite: - Identifikator: ISSN: 1759-6653
CoNE: https://pure.mpg.de/cone/journals/resource/1759-6653